CC3DTransaction Class Reference

#include <mainCC3D.h>

Inheritance diagram for CC3DTransaction:

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Collaboration diagram for CC3DTransaction:

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List of all members.

Public Member Functions

 CC3DTransaction (std::string _filename)
virtual ~CC3DTransaction ()
void applySimulation (bool *_stopSimulation)
QString messageStr ()
void setPauseMutexPtr (QMutex *mutexPtr)
void setFieldDrawMutexPtr (QMutex *mutexPtr)
void setTransactionMutexPtr (QMutex *mutexPtr)
void setBufferFreeSem (QSemaphore *_bufferFillFreeSemPtr)
void setBufferUsedSem (QSemaphore *_bufferFillUsedSemPtr)
void setGraphicsDataFieldPtr (GraphicsDataFields *_graphFieldsPtr)
void setScreenUpdateFrequency (unsigned int _freq)
virtual CompuCell3D::Simulator * getSimulator ()
virtual void setSimulator (CompuCell3D::Simulator *_simulator)
virtual void preStartInit ()
virtual void postStartInit ()
virtual void clearGraphicsFields ()
virtual void loopWork (unsigned int _step)
virtual void loopWorkPostEvent (unsigned int _step)
virtual std::string getSimulationFileName ()
virtual std::string getSimulationPythonScriptName ()
virtual unsigned int getScreenUpdateFrequency ()
virtual
GraphicsDataFields::floatField3D_t * 		createFloatFieldPy (CompuCell3D::Dim3D &_fieldDim, std::string _name)
virtual
GraphicsDataFields::vectorFieldCellLevel_t * 		createVectorFieldCellLevelPy (std::string _fieldName)
virtual bool getStopSimulation ()
virtual void setStopSimulation (bool *_stopSimulation)
virtual void sendStopSimulationRequest ()
virtual void handleErrorMessage (std::string _errorCategory, std::string _error)
virtual void fillPressureVolumeFlexPy (GraphicsDataFields::floatField3D_t &_floatField3D)
void registerPyScriptRunner (PyScriptRunner *_pyScriptRunner)
void simulationThreadCpp ()
void simulationThreadPython ()
void setRunPythonFlag (bool _flag)
bool getRunPythonFlag ()
void setUseXMLFileFlag (bool _flag)
bool getUseXMLFileFlag ()
void setPyDataConf (PythonConfigureData &_pyDataConf)
PythonConfigureData getPyDataConf ()

Private Member Functions

void fillField3D (GraphicsDataFields &graphFields)
void createConcentrationFields (GraphicsDataFields &graphFields, std::map< std::string, CompuCell3D::Field3DImpl< float > * > &_fieldMap)
void fillConcentrationFields (GraphicsDataFields &graphFields, std::map< std::string, CompuCell3D::Field3DImpl< float > * > &_fieldMap)
void createPreasureFields (GraphicsDataFields &graphFields, CompuCell3D::Dim3D fieldDim, BasicArray< CompuCell3D::EnergyFunction * > &energyFunctions)
void fillPressureFields (GraphicsDataFields &graphFields)
void fillPressureVolume (GraphicsDataFields &graphFields, GraphicsDataFields::floatField3D_t &_floatField3D, CompuCell3D::EnergyFunction *energyFunctionPtr)
void fillPressureVolumeFlex (GraphicsDataFields &graphFields, GraphicsDataFields::floatField3D_t &_floatField3D, CompuCell3D::EnergyFunction *energyFunctionPtr)
void createVectorCellFields (GraphicsDataFields &graphFields, CompuCell3D::Dim3D fieldDim, BasicArray< CompuCell3D::EnergyFunction * > &energyFunctions, CompuCell3D::PluginManager< CompuCell3D::Plugin >::plugins_t &pluginMap)
void fillVectorCellFields (GraphicsDataFields &graphFields)
void fillVelocity (GraphicsDataFields &graphFields, GraphicsDataFields::vectorCellFloatField3D_t &_vectorCellFloatField3D, CompuCell3D::Plugin *plugin)
void markBorder (const CompuCell3D::Point3D &_pt, CompuCell3D::CellG *_currentCell, GraphicsData *_pixel)

Private Attributes

std::string filename
std::string pythonScriptNameFromPlayer
PythonConfigureData pyDataConf
PyScriptRunner * pyScriptRunner
unsigned int zPosition
unsigned int screenUpdateFrequency
GraphicsDataFields * graphFieldsPtr
CompuCell3D::Field3D
< CompuCell3D::CellG * > * 		cellFieldG
std::map< std::string,
CompuCell3D::EnergyFunction * > 		pressureNameEnergyMap
std::map< std::string,
CompuCell3D::Plugin * > 		pluginNameMap
QMutex * pauseMutexPtr
QMutex * fieldDrawMutexPtr
QMutex * mutexTransactionPtr
QSemaphore * bufferFillFreeSemPtr
QSemaphore * bufferFillUsedSemPtr
bool * pstopSimulation
CompuCell3D::Simulator * simulator
bool runPythonFlag
bool useXMLFileFlag

Detailed Description

Definition at line 43 of file mainCC3D.h.

Constructor & Destructor Documentation

CC3DTransaction::CC3DTransaction ( std::string  _filename  ) 

Filename

Definition at line 54 of file mainCC3D.cpp.

References filename, pyScriptRunner, runPythonFlag, screenUpdateFrequency, and useXMLFileFlag.

CC3DTransaction::~CC3DTransaction (  )  [virtual]

Definition at line 70 of file mainCC3D.cpp.

Member Function Documentation

void CC3DTransaction::applySimulation ( bool *  _stopSimulation  )  [virtual]

Reimplemented from Transaction.

Definition at line 796 of file mainCC3D.cpp.

References pstopSimulation, runPythonFlag, simulationThreadCpp(), simulationThreadPython(), and useXMLFileFlag.

QString CC3DTransaction::messageStr (  )  [inline]

Definition at line 51 of file mainCC3D.h.

void CC3DTransaction::setPauseMutexPtr ( QMutex *  mutexPtr  )  [inline]

Definition at line 52 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setFieldDrawMutexPtr ( QMutex *  mutexPtr  )  [inline]

Definition at line 53 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setTransactionMutexPtr ( QMutex *  mutexPtr  )  [inline]

Definition at line 54 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setBufferFreeSem ( QSemaphore *  _bufferFillFreeSemPtr  )  [inline]

Definition at line 55 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setBufferUsedSem ( QSemaphore *  _bufferFillUsedSemPtr  )  [inline]

Definition at line 56 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setGraphicsDataFieldPtr ( GraphicsDataFields *  _graphFieldsPtr  )  [inline]

Definition at line 58 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

void CC3DTransaction::setScreenUpdateFrequency ( unsigned int  _freq  )  [inline]

Definition at line 60 of file mainCC3D.h.

Referenced by ImageWindow::configureScreenshotFrequency(), ImageWindow::customEvent(), and ImageWindowBase::simulation().

virtual CompuCell3D::Simulator* CC3DTransaction::getSimulator (  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 63 of file mainCC3D.h.

Referenced by ImageWindow::simulationSerialize().

virtual void CC3DTransaction::setSimulator ( CompuCell3D::Simulator *  _simulator  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 64 of file mainCC3D.h.

void CC3DTransaction::preStartInit (  )  [virtual]

initialization of the drawing utils

allocate fields

assign field ptr

3 rd coordinate value

Now will set up drawing canvas sizes and configure the player

Reimplemented from SimthreadBase.

Definition at line 531 of file mainCC3D.cpp.

References GraphicsDataFields::allocateField3D(), cellFieldG, createConcentrationFields(), CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Simulator::getConcentrationFieldNameMap(), CompuCell3D::Potts3D::getLatticeType(), CompuCell3D::Simulator::getNumSteps(), CompuCell3D::PlayerSettingsPlugin::getPlayerSettings(), CompuCell3D::Simulator::getPotts(), Transaction::getTargetObject(), graphFieldsPtr, GraphicsDataFields::insertPlotNamePlotTypePair(), TransactionStartEvent::latticeType, TransactionStartEvent::numSteps, TransactionStartEvent::playerSettings, simulator, CompuCell3D::Point3D::x, TransactionStartEvent::xSize, CompuCell3D::Point3D::y, TransactionStartEvent::ySize, CompuCell3D::Point3D::z, zPosition, and TransactionStartEvent::zSize.

void CC3DTransaction::postStartInit (  )  [virtual]

fills field3D with values of the cell type

Reimplemented from SimthreadBase.

Definition at line 593 of file mainCC3D.cpp.

References bufferFillFreeSemPtr, bufferFillUsedSemPtr, fillConcentrationFields(), fillField3D(), CompuCell3D::Simulator::getConcentrationFieldNameMap(), CompuCell3D::Simulator::getStep(), Transaction::getTargetObject(), graphFieldsPtr, TransactionRefreshEvent::mcStep, and simulator.

void CC3DTransaction::clearGraphicsFields (  )  [virtual]

Reimplemented from SimthreadBase.

Definition at line 97 of file mainCC3D.cpp.

References GraphicsDataFields::clearAllocatedFields(), and graphFieldsPtr.

void CC3DTransaction::loopWork ( unsigned int  _step  )  [virtual]

Reimplemented from SimthreadBase.

Definition at line 610 of file mainCC3D.cpp.

References fillConcentrationFields(), fillField3D(), fillPressureFields(), fillVectorCellFields(), CompuCell3D::Simulator::getConcentrationFieldNameMap(), graphFieldsPtr, and simulator.

void CC3DTransaction::loopWorkPostEvent ( unsigned int  _step  )  [virtual]

once a pointer is owned by Qt object it will not create memory leak

Reimplemented from SimthreadBase.

Definition at line 618 of file mainCC3D.cpp.

References bufferFillFreeSemPtr, bufferFillUsedSemPtr, CompuCell3D::Simulator::getStep(), Transaction::getTargetObject(), TransactionRefreshEvent::mcStep, pauseMutexPtr, and simulator.

virtual std::string CC3DTransaction::getSimulationFileName (  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 70 of file mainCC3D.h.

virtual std::string CC3DTransaction::getSimulationPythonScriptName (  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 71 of file mainCC3D.h.

virtual unsigned int CC3DTransaction::getScreenUpdateFrequency (  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 78 of file mainCC3D.h.

GraphicsDataFields::floatField3D_t * CC3DTransaction::createFloatFieldPy ( CompuCell3D::Dim3D &  _fieldDim,
std::string  _name 
) [virtual]

Reimplemented from SimthreadBase.

Definition at line 148 of file mainCC3D.cpp.

References GraphicsDataFields::allocateFloatField3D(), GraphicsDataFields::getFloatField3DNameMap(), graphFieldsPtr, GraphicsDataFields::insertPlotNamePlotTypePair(), CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

GraphicsDataFields::vectorFieldCellLevel_t * CC3DTransaction::createVectorFieldCellLevelPy ( std::string  _fieldName  )  [virtual]

Reimplemented from SimthreadBase.

Definition at line 168 of file mainCC3D.cpp.

References GraphicsDataFields::allocateVectorFieldCellLevel(), GraphicsDataFields::getVectorFieldCellLevelNameMap(), graphFieldsPtr, and GraphicsDataFields::insertPlotNamePlotTypePair().

bool CC3DTransaction::getStopSimulation (  )  [virtual]

Reimplemented from SimthreadBase.

Definition at line 92 of file mainCC3D.cpp.

References pstopSimulation.

virtual void CC3DTransaction::setStopSimulation ( bool *  _stopSimulation  )  [inline, virtual]

Reimplemented from SimthreadBase.

Definition at line 83 of file mainCC3D.h.

void CC3DTransaction::sendStopSimulationRequest (  )  [virtual]

once a pointer is owned by Qt object

it will not create memory leak

Reimplemented from SimthreadBase.

Definition at line 787 of file mainCC3D.cpp.

References Transaction::getTargetObject(), and TransactionStopSimulationEvent::message.

void CC3DTransaction::handleErrorMessage ( std::string  _errorCategory,
std::string  _error 
) [virtual]

once a pointer is owned by Qt object

it will not create memory leak

Reimplemented from SimthreadBase.

Definition at line 813 of file mainCC3D.cpp.

References TransactionErrorEvent::errorCategory, Transaction::getTargetObject(), and TransactionErrorEvent::message.

Referenced by simulationThreadPython().

void CC3DTransaction::fillPressureVolumeFlexPy ( GraphicsDataFields::floatField3D_t &  _floatField3D  )  [virtual]

Reimplemented from SimthreadBase.

Definition at line 187 of file mainCC3D.cpp.

References cellFieldG, CompuCell3D::Field3D< T >::get(), GraphicsDataFields::getSizeL(), GraphicsDataFields::getSizeM(), GraphicsDataFields::getSizeN(), graphFieldsPtr, CompuCell3D::CellG::targetVolume, CompuCell3D::CellG::volume, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

void CC3DTransaction::registerPyScriptRunner ( PyScriptRunner *  _pyScriptRunner  )  [inline]

Definition at line 90 of file mainCC3D.h.

void CC3DTransaction::simulationThreadCpp (  ) 

Definition at line 639 of file mainCC3D.cpp.

References simulationThreadPython().

Referenced by applySimulation().

void CC3DTransaction::simulationThreadPython (  ) 

once a pointer is owned by Qt object

it will not create memory leak

Definition at line 746 of file mainCC3D.cpp.

References BasicFileLocation::getFilename(), BasicFileLocation::getLine(), BasicException::getLocation(), BasicException::getMessage(), Transaction::getTargetObject(), handleErrorMessage(), TransactionFinishEvent::message, pyDataConf, PythonConfigureData::pythonFileName, and simulationPython().

Referenced by applySimulation(), and simulationThreadCpp().

void CC3DTransaction::setRunPythonFlag ( bool  _flag  )  [inline]

Definition at line 95 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

bool CC3DTransaction::getRunPythonFlag (  )  [inline]

Definition at line 96 of file mainCC3D.h.

void CC3DTransaction::setUseXMLFileFlag ( bool  _flag  )  [inline]

Definition at line 98 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

bool CC3DTransaction::getUseXMLFileFlag (  )  [inline]

Definition at line 99 of file mainCC3D.h.

void CC3DTransaction::setPyDataConf ( PythonConfigureData &  _pyDataConf  )  [inline]

Definition at line 101 of file mainCC3D.h.

Referenced by ImageWindowBase::simulation().

PythonConfigureData CC3DTransaction::getPyDataConf (  )  [inline]

Definition at line 102 of file mainCC3D.h.

void CC3DTransaction::fillField3D ( GraphicsDataFields &  graphFields  )  [private]

set mutextes

unset

Definition at line 461 of file mainCC3D.cpp.

References CompuCell3D::CellG::averageConcentration, cellFieldG, GraphicsDataFields::field3DGraphicsData, fieldDrawMutexPtr, CompuCell3D::CellG::flag, CompuCell3D::Field3D< T >::get(), GraphicsDataFields::getSizeL(), GraphicsDataFields::getSizeM(), GraphicsDataFields::getSizeN(), CompuCell3D::CellG::id, CompuCell3D::CellG::type, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by loopWork(), and postStartInit().

void CC3DTransaction::createConcentrationFields ( GraphicsDataFields &  graphFields,
std::map< std::string, CompuCell3D::Field3DImpl< float > * > &  _fieldMap 
) [private]

Referenced by preStartInit().

void CC3DTransaction::fillConcentrationFields ( GraphicsDataFields &  graphFields,
std::map< std::string, CompuCell3D::Field3DImpl< float > * > &  _fieldMap 
) [private]

Referenced by loopWork(), and postStartInit().

void CC3DTransaction::createPreasureFields ( GraphicsDataFields &  graphFields,
CompuCell3D::Dim3D  fieldDim,
BasicArray< CompuCell3D::EnergyFunction * > &  energyFunctions 
) [private]

Definition at line 217 of file mainCC3D.cpp.

References GraphicsDataFields::allocateFloatField3D(), BasicArray< T >::getSize(), GraphicsDataFields::insertPlotNamePlotTypePair(), pressureNameEnergyMap, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

void CC3DTransaction::fillPressureFields ( GraphicsDataFields &  graphFields  )  [private]

set mutextes

unset

Definition at line 243 of file mainCC3D.cpp.

References fieldDrawMutexPtr, fillPressureVolume(), fillPressureVolumeFlex(), GraphicsDataFields::getFloatField3DNameMap(), and pressureNameEnergyMap.

Referenced by loopWork().

void CC3DTransaction::fillPressureVolume ( GraphicsDataFields &  graphFields,
GraphicsDataFields::floatField3D_t &  _floatField3D,
CompuCell3D::EnergyFunction *  energyFunctionPtr 
) [private]

Definition at line 284 of file mainCC3D.cpp.

Referenced by fillPressureFields().

void CC3DTransaction::fillPressureVolumeFlex ( GraphicsDataFields &  graphFields,
GraphicsDataFields::floatField3D_t &  _floatField3D,
CompuCell3D::EnergyFunction *  energyFunctionPtr 
) [private]

Definition at line 318 of file mainCC3D.cpp.

Referenced by fillPressureFields().

void CC3DTransaction::createVectorCellFields ( GraphicsDataFields &  graphFields,
CompuCell3D::Dim3D  fieldDim,
BasicArray< CompuCell3D::EnergyFunction * > &  energyFunctions,
CompuCell3D::PluginManager< CompuCell3D::Plugin >::plugins_t &  pluginMap 
) [private]

Definition at line 353 of file mainCC3D.cpp.

References GraphicsDataFields::allocateVectorCellFloatField3D(), GraphicsDataFields::insertPlotNamePlotTypePair(), pluginNameMap, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

void CC3DTransaction::fillVectorCellFields ( GraphicsDataFields &  graphFields  )  [private]

set mutextes

unset

Definition at line 377 of file mainCC3D.cpp.

References fieldDrawMutexPtr, fillVelocity(), GraphicsDataFields::getVectorCellFloatField3DNameMap(), and pluginNameMap.

Referenced by loopWork().

void CC3DTransaction::fillVelocity ( GraphicsDataFields &  graphFields,
GraphicsDataFields::vectorCellFloatField3D_t &  _vectorCellFloatField3D,
CompuCell3D::Plugin *  plugin 
) [private]

Definition at line 417 of file mainCC3D.cpp.

References cellFieldG, CompuCell3D::CellG::extraAttribPtr, BasicClassAccessor< T >::get(), CompuCell3D::Field3D< T >::get(), CompuCell3D::CellVelocityData::getAverageVelocity(), GraphicsDataFields::getSizeL(), GraphicsDataFields::getSizeM(), GraphicsDataFields::getSizeN(), CompuCell3D::Plugin::toString(), CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by fillVectorCellFields().

void CC3DTransaction::markBorder ( const CompuCell3D::Point3D &  _pt,
CompuCell3D::CellG *  _currentCell,
GraphicsData *  _pixel 
) [private]

Definition at line 498 of file mainCC3D.cpp.

References cellFieldG, CompuCell3D::Field3D< T >::get(), and GraphicsData::type.

Member Data Documentation

std::string CC3DTransaction::filename [private]

Definition at line 106 of file mainCC3D.h.

Referenced by CC3DTransaction().

std::string CC3DTransaction::pythonScriptNameFromPlayer [private]

Definition at line 107 of file mainCC3D.h.

PythonConfigureData CC3DTransaction::pyDataConf [private]

Definition at line 109 of file mainCC3D.h.

Referenced by simulationThreadPython().

PyScriptRunner* CC3DTransaction::pyScriptRunner [private]

Definition at line 110 of file mainCC3D.h.

Referenced by CC3DTransaction().

unsigned int CC3DTransaction::zPosition [private]

Definition at line 113 of file mainCC3D.h.

Referenced by preStartInit().

unsigned int CC3DTransaction::screenUpdateFrequency [private]

Definition at line 114 of file mainCC3D.h.

Referenced by CC3DTransaction().

GraphicsDataFields* CC3DTransaction::graphFieldsPtr [private]

Definition at line 116 of file mainCC3D.h.

Referenced by clearGraphicsFields(), createFloatFieldPy(), createVectorFieldCellLevelPy(), fillPressureVolumeFlexPy(), loopWork(), postStartInit(), and preStartInit().

CompuCell3D::Field3D<CompuCell3D::CellG *>* CC3DTransaction::cellFieldG [private]

Definition at line 152 of file mainCC3D.h.

Referenced by fillField3D(), fillPressureVolumeFlexPy(), fillVelocity(), markBorder(), and preStartInit().

std::map<std::string, CompuCell3D::EnergyFunction *> CC3DTransaction::pressureNameEnergyMap [private]

Definition at line 155 of file mainCC3D.h.

Referenced by createPreasureFields(), and fillPressureFields().

std::map<std::string, CompuCell3D::Plugin *> CC3DTransaction::pluginNameMap [private]

Definition at line 156 of file mainCC3D.h.

Referenced by createVectorCellFields(), and fillVectorCellFields().

QMutex* CC3DTransaction::pauseMutexPtr [private]

Definition at line 159 of file mainCC3D.h.

Referenced by loopWorkPostEvent().

QMutex* CC3DTransaction::fieldDrawMutexPtr [private]

Definition at line 160 of file mainCC3D.h.

Referenced by fillField3D(), fillPressureFields(), and fillVectorCellFields().

QMutex* CC3DTransaction::mutexTransactionPtr [private]

Definition at line 161 of file mainCC3D.h.

QSemaphore* CC3DTransaction::bufferFillFreeSemPtr [private]

Definition at line 162 of file mainCC3D.h.

Referenced by loopWorkPostEvent(), and postStartInit().

QSemaphore* CC3DTransaction::bufferFillUsedSemPtr [private]

Definition at line 163 of file mainCC3D.h.

Referenced by loopWorkPostEvent(), and postStartInit().

bool* CC3DTransaction::pstopSimulation [private]

Reimplemented from SimthreadBase.

Definition at line 166 of file mainCC3D.h.

Referenced by applySimulation(), and getStopSimulation().

CompuCell3D::Simulator* CC3DTransaction::simulator [private]

Definition at line 169 of file mainCC3D.h.

Referenced by loopWork(), loopWorkPostEvent(), postStartInit(), and preStartInit().

bool CC3DTransaction::runPythonFlag [private]

Definition at line 170 of file mainCC3D.h.

Referenced by applySimulation(), and CC3DTransaction().

bool CC3DTransaction::useXMLFileFlag [private]

Definition at line 171 of file mainCC3D.h.

Referenced by applySimulation(), and CC3DTransaction().

The documentation for this class was generated from the following files:
Generated on Thu Dec 4 11:41:20 2008 for CompuCell3D by  doxygen 1.5.6