CompuCell3D::Automaton Class Reference

#include <Automaton.h>

Inheritance diagram for CompuCell3D::Automaton:

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Collaboration diagram for CompuCell3D::Automaton:

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List of all members.

Public Member Functions
	Automaton ()
virtual	~Automaton ()
virtual void	creation (CellG *newCell)
virtual void	updateVariables (CellG *newCell)
virtual void	field3DChange (const Point3D &pt, CellG *newCell, CellG *oldCell)
virtual unsigned char	getCellType (const CellG *) const =0
virtual std::string	getTypeName (const char type) const =0
virtual unsigned char	getTypeId (const std::string typeName) const =0
Protected Attributes
Potts3D *	potts
CellType *	classType

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Detailed Description

Definition at line 45 of file Automaton.h.

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Constructor & Destructor Documentation

CompuCell3D::Automaton::Automaton

(

)

[inline]

Definition at line 53 of file Automaton.h.

virtual CompuCell3D::Automaton::~Automaton

(

)

[inline, virtual]

Definition at line 55 of file Automaton.h.

References classType.

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Member Function Documentation

virtual void CompuCell3D::Automaton::creation

(

CellG *

newCell

)

[inline, virtual]

Definition at line 58 of file Automaton.h.

Referenced by field3DChange().

virtual void CompuCell3D::Automaton::updateVariables

(

CellG *

newCell

)

[inline, virtual]

Definition at line 59 of file Automaton.h.

Referenced by field3DChange().

void Automaton::field3DChange	(	const Point3D &	pt,
		CellG *	newCell,
		CellG *	oldCell
	)			[virtual]

Definition at line 4 of file Automaton.cpp.

References classType, creation(), CompuCell3D::CellG::type, CompuCell3D::CellType::update(), and updateVariables().

virtual unsigned char CompuCell3D::Automaton::getCellType

(

const CellG *

)

const [pure virtual]

Implemented in CompuCell3D::CellTypePlugin, CompuCell3D::ChickGrowthTypePlugin, and CompuCell3D::ChickTypePlugin.

virtual std::string CompuCell3D::Automaton::getTypeName

(

const char

type

)

const [pure virtual]

Implemented in CompuCell3D::CellTypePlugin, CompuCell3D::ChickGrowthTypePlugin, and CompuCell3D::ChickTypePlugin.

virtual unsigned char CompuCell3D::Automaton::getTypeId

(

const std::string

typeName

)

const [pure virtual]

Implemented in CompuCell3D::CellTypePlugin, CompuCell3D::ChickGrowthTypePlugin, and CompuCell3D::ChickTypePlugin.

Referenced by CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse(), CompuCell3D::FastDiffusionSolver2DFE::diffuseSingleField(), CompuCell3D::RealPlasticityTrackerPlugin::extraInit(), CompuCell3D::PlasticityTrackerPlugin::extraInit(), CompuCell3D::UniformFieldInitializer::initCellType(), CompuCell3D::BlobFieldInitializer::initCellType(), CompuCell3D::SecretionData::initialize(), CompuCell3D::DiffusionData::initialize(), CompuCell3D::Potts3D::initializeCellTypeMotility(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::initializeConcentration(), CompuCell3D::LengthConstraintPlugin::initTypeId(), CompuCell3D::FastDiffusionSolver2DFE::secreteConstantConcentrationSingleField(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverADE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteSingleField(), CompuCell3D::AdvectionDiffusionSolverFE::secreteSingleField(), CompuCell3D::PIFInitializer::start(), CompuCell3D::VolumePlugin::update(), CompuCell3D::SurfacePlugin::update(), CompuCell3D::OrientedContactPlugin::update(), CompuCell3D::NeighborStickPlugin::update(), CompuCell3D::ExternalPotentialPlugin::update(), CompuCell3D::ContactMultiCadPlugin::update(), CompuCell3D::ContactLocalProductPlugin::update(), CompuCell3D::ContactLocalFlexPlugin::update(), CompuCell3D::ContactPlugin::update(), CompuCell3D::CompartmentPlugin::update(), and CompuCell3D::ChemotaxisPlugin::update().

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Member Data Documentation

Potts3D* CompuCell3D::Automaton::potts [protected]

Reimplemented in CompuCell3D::CellTypePlugin, CompuCell3D::ChickGrowthTypePlugin, and CompuCell3D::ChickTypePlugin.

Definition at line 48 of file Automaton.h.

CellType* CompuCell3D::Automaton::classType [protected]

Definition at line 50 of file Automaton.h.

Referenced by CompuCell3D::CellTypePlugin::CellTypePlugin(), field3DChange(), CompuCell3D::ChickTypePlugin::init(), CompuCell3D::ChickGrowthTypePlugin::init(), ~Automaton(), and CompuCell3D::CellTypePlugin::~CellTypePlugin().

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/Automaton/Automaton.h
• CompuCell/DOXYGEN/core/CompuCell3D/Automaton/Automaton.cpp