CompuCell3D::BlobFieldInitializer Class Reference

#include <BlobFieldInitializer.h>

Inheritance diagram for CompuCell3D::BlobFieldInitializer:

[legend]

Collaboration diagram for CompuCell3D::BlobFieldInitializer:

[legend]

List of all members.

Public Member Functions
	BlobFieldInitializer ()
virtual	~BlobFieldInitializer ()
void	setPotts (Potts3D *potts)
double	distance (double, double, double, double, double, double)
Dim3D	getBlobDim ()
virtual void	init (Simulator *simulator, CC3DXMLElement *_xmlData=0)
virtual void	start ()
virtual void	step (const unsigned int currentStep)
virtual void	finish ()
Dim3D	getBlobDimensions (const Dim3D &dim, int size)
void	initializeCellTypesCellSort ()
void	initializeEngulfment ()
virtual std::string	steerableName ()
virtual std::string	toString ()
Public Attributes
CC3DXMLElement *	moduleXMLDataPtr
Protected Member Functions
void	layOutCells (const BlobFieldInitializerData &_initData)
unsigned char	initCellType (const BlobFieldInitializerData &_initData)
Protected Attributes
Potts3D *	potts
Dim3D	blobDim
bool	cellSortInit
std::vector < BlobFieldInitializerData >	blobInitializerData
BlobFieldInitializerData	oldStyleInitData
EngulfmentData	engulfmentData

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Detailed Description

Definition at line 76 of file BlobFieldInitializer.h.

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Constructor & Destructor Documentation

BlobFieldInitializer::BlobFieldInitializer

(

)

Definition at line 66 of file BlobFieldInitializer.cpp.

virtual CompuCell3D::BlobFieldInitializer::~BlobFieldInitializer

(

)

[inline, virtual]

Definition at line 104 of file BlobFieldInitializer.h.

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Member Function Documentation

void BlobFieldInitializer::layOutCells

(

const BlobFieldInitializerData &

_initData

)

[protected]

Definition at line 157 of file BlobFieldInitializer.cpp.

References ASSERT_OR_THROW, CompuCell3D::BlobFieldInitializerData::center, CompuCell3D::Potts3D::createCellG(), TypeChangeWatcherExample::dim, distance(), CompuCell3D::BlobFieldInitializerData::gap, getBlobDimensions(), CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Field3DImpl< T >::getDim(), CompuCell3D::BoundaryStrategy::getInstance(), initCellType(), potts, CompuCell3D::BlobFieldInitializerData::radius, CompuCell3D::WatchableField3D< T >::set(), CompuCell3D::CellG::type, CompuCell3D::BlobFieldInitializerData::width, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by start().

unsigned char BlobFieldInitializer::initCellType

(

const BlobFieldInitializerData &

_initData

)

[protected]

Definition at line 232 of file BlobFieldInitializer.cpp.

References CompuCell3D::Potts3D::getAutomaton(), BasicRandomNumberGenerator::getInstance(), BasicRandomNumberGenerator::getInteger(), CompuCell3D::Automaton::getTypeId(), potts, and CompuCell3D::BlobFieldInitializerData::typeNames.

Referenced by layOutCells().

void CompuCell3D::BlobFieldInitializer::setPotts

(

Potts3D *

potts

)

[inline]

Definition at line 105 of file BlobFieldInitializer.h.

double BlobFieldInitializer::distance	(	double	ax,
		double	ay,
		double	az,
		double	bx,
		double	by,
		double	bz
	)

Definition at line 148 of file BlobFieldInitializer.cpp.

Referenced by layOutCells().

Dim3D CompuCell3D::BlobFieldInitializer::getBlobDim

(

)

[inline]

Definition at line 107 of file BlobFieldInitializer.h.

void BlobFieldInitializer::init	(	Simulator *	simulator,
		CC3DXMLElement *	_xmlData = 0
	)			[virtual]

Reimplemented from CompuCell3D::SimObject.

Definition at line 69 of file BlobFieldInitializer.cpp.

References ASSERT_OR_THROW, blobInitializerData, CompuCell3D::EngulfmentData::bottomType, cellSortInit, CompuCell3D::BlobFieldInitializerData::center, TypeChangeWatcherExample::dim, CompuCell3D::EngulfmentData::engulfment, CompuCell3D::EngulfmentData::engulfmentCoordinate, CompuCell3D::EngulfmentData::engulfmentCutoff, engulfmentData, CompuCell3D::BlobFieldInitializerData::gap, CC3DXMLElement::getAttribute(), CC3DXMLElement::getAttributeAsUInt(), CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Field3DImpl< T >::getDim(), CC3DXMLElement::getElements(), CC3DXMLElement::getFirstElement(), CompuCell3D::Simulator::getPotts(), CC3DXMLElement::getText(), CC3DXMLElement::getUInt(), oldStyleInitData, parseStringIntoList(), potts, CompuCell3D::BlobFieldInitializerData::radius, CompuCell3D::EngulfmentData::topType, CompuCell3D::BlobFieldInitializerData::typeNames, CompuCell3D::BlobFieldInitializerData::typeNamesString, CompuCell3D::BlobFieldInitializerData::width, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

void BlobFieldInitializer::start

(

)

[virtual]

I am changing here so that now I will work with cellFieldG - the field of CellG

• this way CompuCell will have more functionality

Implements CompuCell3D::Steppable.

Definition at line 246 of file BlobFieldInitializer.cpp.

References ASSERT_OR_THROW, blobInitializerData, cellSortInit, CompuCell3D::BlobFieldInitializerData::center, TypeChangeWatcherExample::dim, CompuCell3D::EngulfmentData::engulfment, engulfmentData, CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Field3DImpl< T >::getDim(), initializeCellTypesCellSort(), initializeEngulfment(), layOutCells(), oldStyleInitData, potts, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

virtual void CompuCell3D::BlobFieldInitializer::step

(

const unsigned int

currentStep

)

[inline, virtual]

Implements CompuCell3D::Steppable.

Definition at line 114 of file BlobFieldInitializer.h.

virtual void CompuCell3D::BlobFieldInitializer::finish

(

)

[inline, virtual]

Implements CompuCell3D::Steppable.

Definition at line 115 of file BlobFieldInitializer.h.

Dim3D BlobFieldInitializer::getBlobDimensions	(	const Dim3D &	dim,
		int	size
	)

Definition at line 285 of file BlobFieldInitializer.cpp.

References blobDim, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by layOutCells().

void BlobFieldInitializer::initializeCellTypesCellSort

(

)

will initialize cell type here depending on the position of the cells

loop over all the cells in the inventory

randomly assign types for cell sort

Definition at line 375 of file BlobFieldInitializer.cpp.

References CompuCell3D::CellInventory::cellInventoryBegin(), CompuCell3D::CellInventory::cellInventoryEnd(), CompuCell3D::Potts3D::getCellInventory(), BasicRandomNumberGenerator::getInstance(), BasicRandomNumberGenerator::getRatio(), potts, and CompuCell3D::CellG::type.

Referenced by start().

void BlobFieldInitializer::initializeEngulfment

(

)

will initialize cell type to be 1

loop over all the cells in the inventory

Definition at line 302 of file BlobFieldInitializer.cpp.

References ASSERT_OR_THROW, CompuCell3D::EngulfmentData::bottomType, CompuCell3D::CellInventory::cellInventoryBegin(), CompuCell3D::CellInventory::cellInventoryEnd(), TypeChangeWatcherExample::dim, CompuCell3D::EngulfmentData::engulfmentCoordinate, CompuCell3D::EngulfmentData::engulfmentCutoff, engulfmentData, CompuCell3D::Field3DImpl< T >::get(), CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Potts3D::getCellInventory(), CompuCell3D::Field3DImpl< T >::getDim(), CompuCell3D::CellTypePlugin::getTypeId(), CompuCell3D::Simulator::pluginManager, potts, CompuCell3D::EngulfmentData::topType, CompuCell3D::CellG::type, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by start().

std::string BlobFieldInitializer::steerableName

(

)

[virtual]

Reimplemented from CompuCell3D::SteerableObject.

Definition at line 57 of file BlobFieldInitializer.cpp.

References toString().

std::string BlobFieldInitializer::toString

(

)

[virtual]

Reimplemented from CompuCell3D::Steppable.

Definition at line 61 of file BlobFieldInitializer.cpp.

Referenced by steerableName().

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Member Data Documentation

Potts3D* CompuCell3D::BlobFieldInitializer::potts [protected]

Definition at line 78 of file BlobFieldInitializer.h.

Referenced by init(), initCellType(), initializeCellTypesCellSort(), initializeEngulfment(), layOutCells(), and start().

Dim3D CompuCell3D::BlobFieldInitializer::blobDim [protected]

Definition at line 83 of file BlobFieldInitializer.h.

Referenced by getBlobDimensions().

bool CompuCell3D::BlobFieldInitializer::cellSortInit [protected]

Definition at line 84 of file BlobFieldInitializer.h.

Referenced by init(), and start().

std::vector<BlobFieldInitializerData> CompuCell3D::BlobFieldInitializer::blobInitializerData [protected]

Definition at line 85 of file BlobFieldInitializer.h.

Referenced by init(), and start().

BlobFieldInitializerData CompuCell3D::BlobFieldInitializer::oldStyleInitData [protected]

Definition at line 86 of file BlobFieldInitializer.h.

Referenced by init(), and start().

EngulfmentData CompuCell3D::BlobFieldInitializer::engulfmentData [protected]

Definition at line 87 of file BlobFieldInitializer.h.

Referenced by init(), initializeEngulfment(), and start().

CC3DXMLElement* CompuCell3D::BlobFieldInitializer::moduleXMLDataPtr

Definition at line 101 of file BlobFieldInitializer.h.

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/steppables/BlobFieldInitializer/BlobFieldInitializer.h
• CompuCell/DOXYGEN/core/CompuCell3D/steppables/BlobFieldInitializer/BlobFieldInitializer.cpp