CompuCell3D::BoundaryStrategy Class Reference

#include <BoundaryStrategy.h>

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List of all members.

Public Member Functions

LatticeMultiplicativeFactors getLatticeMultiplicativeFactors ()
LatticeMultiplicativeFactors generateLatticeMultiplicativeFactors (LatticeType _latticeType, Dim3D _dim)
LatticeType getLatticeType ()
int getNumPixels (int x, int y, int z) const
bool isValid (const Point3D &pt) const
void setIrregular ()
void setDim (const Dim3D theDim)
void setCurrentStep (const int currentStep)
Point3D getNeighbor (const Point3D &pt, unsigned int &token, double &distance, bool checkBounds=true)
const std::vector< Point3D > & getOffsetVec () const
const std::vector< float > & getDistanceVec () const
const std::vector< Point3D > & getOffsetVec (Point3D &pt) const
const std::vector< unsigned int > & getNeighborOrderIndexVec () const
Neighbor getNeighborDirect (Point3D &pt, unsigned int idx, bool checkBounds=true, bool calculatePtTrans=false)
float getMaxDistance ()
unsigned int getMaxNeighborIndexFromDepth (float depth)
unsigned int getMaxNeighborOrder ()
unsigned int getMaxNeighborIndexFromNeighborOrder (unsigned int _neighborOrder)
 ~BoundaryStrategy ()
void prepareNeighborListsBasedOnNeighborOrder (unsigned int _neighborOrder)
void prepareNeighborLists (float _maxDistance=4.0)
void prepareNeighborListsSquare (float _maxDistance=4.0)
void prepareNeighborListsHex (float _maxDistance=4.0)
Coordinates3D< double > HexCoord (const Point3D &_pt)
Coordinates3D< double > calculatePointCoordinates (const Point3D &_pt)
bool precisionCompare (float _x, float _y, float _prec=1e-6)

Static Public Member Functions

static void instantiate (string boundary_x, string boundary_y, string boundary_z, string alg, int index, int size, string inputfile, LatticeType latticeType=SQUARE_LATTICE)
static BoundaryStrategy * getInstance ()
static void destroy ()

Private Member Functions

 BoundaryStrategy ()
 BoundaryStrategy (string boundary_x, string boundary_y, string boundary_z, string alg, int index, int size, string inputfile, LatticeType latticeType=SQUARE_LATTICE)
bool isValid (const int coordinate, const int max_value)
bool checkIfOffsetAlreadyStacked (Point3D &, std::vector< Point3D > &)
bool checkEuclidianDistance (Coordinates3D< double > &, Coordinates3D< double > &, float)
double calculateDistance (Coordinates3D< double > &, Coordinates3D< double > &)
void initializeQuickCheckField (Dim3D)
void getOffsetsAndDistances (Point3D ctPt, float maxDistance, Field3DImpl< char > &tempField, std::vector< Point3D > &offsetVecTmp, std::vector< float > &distanceVecTmp, std::vector< unsigned int > &neighborOrderIndexVecTmp)

Private Attributes

LatticeMultiplicativeFactors lmf
Dim3D dim
int currentStep
bool regular
Boundary * strategy_x
Boundary * strategy_y
Boundary * strategy_z
Algorithm * algorithm
std::vector< Point3D > offsetVec
std::vector< float > distanceVec
std::vector< unsigned int > neighborOrderIndexVec
float maxDistance
bool neighborListsInitializedFlag
std::vector< std::vector
< Point3D > > 		hexOffsetArray
std::vector< std::vector< float > > hexDistanceArray
std::vector< std::vector
< unsigned int > > 		hexNeighborOrderIndexArray
LatticeType latticeType

Static Private Attributes

static BoundaryStrategy * singleton

Detailed Description

Definition at line 67 of file BoundaryStrategy.h.

Constructor & Destructor Documentation

BoundaryStrategy::BoundaryStrategy (  )  [private]

Definition at line 69 of file BoundaryStrategy.cpp.

References algorithm, CompuCell3D::AlgorithmFactory::createAlgorithm(), CompuCell3D::BoundaryFactory::createBoundary(), CompuCell3D::AlgorithmFactory::Default, latticeType, neighborListsInitializedFlag, CompuCell3D::BoundaryFactory::no_flux, regular, CompuCell3D::SQUARE_LATTICE, strategy_x, strategy_y, strategy_z, CompuCell3D::X_EVEN, CompuCell3D::X_ODD, CompuCell3D::Y_EVEN, CompuCell3D::Y_ODD, CompuCell3D::Z_EVEN, and CompuCell3D::Z_ODD.

BoundaryStrategy::BoundaryStrategy ( string  boundary_x,
string  boundary_y,
string  boundary_z,
string  alg,
int  index,
int  size,
string  inputfile,
LatticeType  latticeType = SQUARE_LATTICE 
) [private]

Definition at line 90 of file BoundaryStrategy.cpp.

References algorithm, CompuCell3D::AlgorithmFactory::createAlgorithm(), CompuCell3D::BoundaryFactory::createBoundary(), neighborListsInitializedFlag, regular, strategy_x, strategy_y, strategy_z, CompuCell3D::X_EVEN, CompuCell3D::X_ODD, CompuCell3D::Y_EVEN, CompuCell3D::Y_ODD, CompuCell3D::Z_EVEN, and CompuCell3D::Z_ODD.

BoundaryStrategy::~BoundaryStrategy (  ) 

Definition at line 111 of file BoundaryStrategy.cpp.

References singleton, strategy_x, strategy_y, and strategy_z.

Member Function Documentation

bool BoundaryStrategy::isValid ( const int  coordinate,
const int  max_value 
) [private]

Definition at line 184 of file BoundaryStrategy.cpp.

Referenced by getNeighbor(), and getNeighborDirect().

bool BoundaryStrategy::checkIfOffsetAlreadyStacked ( Point3D &  _ptToCheck,
std::vector< Point3D > &  _offsetVec 
) [private]

Definition at line 310 of file BoundaryStrategy.cpp.

References CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

bool BoundaryStrategy::checkEuclidianDistance ( Coordinates3D< double > &  _pt1,
Coordinates3D< double > &  _pt2,
float  _distance 
) [private]

Definition at line 323 of file BoundaryStrategy.cpp.

References calculateDistance().

double BoundaryStrategy::calculateDistance ( Coordinates3D< double > &  _pt1,
Coordinates3D< double > &  _pt2 
) [private]

Definition at line 319 of file BoundaryStrategy.cpp.

References Coordinates3D< T >::x, Coordinates3D< T >::y, and Coordinates3D< T >::z.

Referenced by checkEuclidianDistance().

void CompuCell3D::BoundaryStrategy::initializeQuickCheckField ( Dim3D   )  [private]

void CompuCell3D::BoundaryStrategy::getOffsetsAndDistances ( Point3D  ctPt,
float  maxDistance,
Field3DImpl< char > &  tempField,
std::vector< Point3D > &  offsetVecTmp,
std::vector< float > &  distanceVecTmp,
std::vector< unsigned int > &  neighborOrderIndexVecTmp 
) [private]

Referenced by prepareNeighborListsHex(), and prepareNeighborListsSquare().

LatticeMultiplicativeFactors CompuCell3D::BoundaryStrategy::getLatticeMultiplicativeFactors (  )  [inline]

Definition at line 117 of file BoundaryStrategy.h.

Referenced by CompuCell3D::SurfaceTrackerPlugin::update().

LatticeMultiplicativeFactors BoundaryStrategy::generateLatticeMultiplicativeFactors ( LatticeType  _latticeType,
Dim3D  _dim 
)

Definition at line 122 of file BoundaryStrategy.cpp.

References CompuCell3D::HEXAGONAL_LATTICE, CompuCell3D::LatticeMultiplicativeFactors::lengthMF, CompuCell3D::LatticeMultiplicativeFactors::surfaceMF, CompuCell3D::LatticeMultiplicativeFactors::volumeMF, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by prepareNeighborLists().

LatticeType CompuCell3D::BoundaryStrategy::getLatticeType (  )  [inline]

Definition at line 119 of file BoundaryStrategy.h.

Referenced by CompuCell3D::Potts3D::getLatticeType().

int BoundaryStrategy::getNumPixels ( int  x,
int  y,
int  z 
) const

Definition at line 302 of file BoundaryStrategy.cpp.

References algorithm, and CompuCell3D::Algorithm::getNumPixels().

bool BoundaryStrategy::isValid ( const Point3D &  pt  )  const

Definition at line 157 of file BoundaryStrategy.cpp.

References algorithm, dim, CompuCell3D::Algorithm::inGrid(), CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

void BoundaryStrategy::setIrregular (  ) 

Definition at line 229 of file BoundaryStrategy.cpp.

References regular.

void BoundaryStrategy::setDim ( const Dim3D  theDim  ) 

Definition at line 194 of file BoundaryStrategy.cpp.

References algorithm, dim, neighborListsInitializedFlag, prepareNeighborLists(), and CompuCell3D::Algorithm::setDim().

Referenced by CompuCell3D::Simulator::initializePottsCC3D(), and CompuCell3D::Field3DImpl< precision >::setDim().

void BoundaryStrategy::setCurrentStep ( const int  currentStep  ) 

Definition at line 218 of file BoundaryStrategy.cpp.

References algorithm, currentStep, and CompuCell3D::Algorithm::setCurrentStep().

Point3D BoundaryStrategy::getNeighbor ( const Point3D &  pt,
unsigned int &  token,
double &  distance,
bool  checkBounds = true 
)

Definition at line 246 of file BoundaryStrategy.cpp.

References CompuCell3D::Boundary::applyCondition(), CompuCell3D::NeighborFinder::destroy(), dim, CompuCell3D::Neighbor::distance, CompuCell3D::NeighborFinder::getInstance(), CompuCell3D::NeighborFinder::getNeighbor(), isValid(), CompuCell3D::Neighbor::pt, regular, strategy_x, strategy_y, strategy_z, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by CompuCell3D::Field3D< precision >::getNeighbor().

const std::vector<Point3D>& CompuCell3D::BoundaryStrategy::getOffsetVec (  )  const [inline]

Definition at line 129 of file BoundaryStrategy.h.

Referenced by CompuCell3D::DiffusableVector2D< float >::allocateDiffusableFieldVector(), and CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse().

const std::vector<float>& CompuCell3D::BoundaryStrategy::getDistanceVec (  )  const [inline]

Definition at line 130 of file BoundaryStrategy.h.

const std::vector<Point3D>& CompuCell3D::BoundaryStrategy::getOffsetVec ( Point3D &  pt  )  const [inline]

Definition at line 131 of file BoundaryStrategy.h.

References CompuCell3D::HEXAGONAL_LATTICE, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

const std::vector<unsigned int>& CompuCell3D::BoundaryStrategy::getNeighborOrderIndexVec (  )  const [inline]

Definition at line 139 of file BoundaryStrategy.h.

Neighbor BoundaryStrategy::getNeighborDirect ( Point3D &  pt,
unsigned int  idx,
bool  checkBounds = true,
bool  calculatePtTrans = false 
)

Definition at line 811 of file BoundaryStrategy.cpp.

References CompuCell3D::Boundary::applyCondition(), calculatePointCoordinates(), dim, CompuCell3D::Neighbor::distance, distanceVec, CompuCell3D::HEXAGONAL_LATTICE, HexCoord(), hexDistanceArray, hexOffsetArray, isValid(), latticeType, CompuCell3D::LatticeMultiplicativeFactors::lengthMF, lmf, offsetVec, CompuCell3D::Neighbor::pt, CompuCell3D::Neighbor::ptTrans, regular, strategy_x, strategy_y, strategy_z, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by CompuCell3D::StretchnessPlugin::changeEnergy(), CompuCell3D::RearrangementPlugin::changeEnergy(), CompuCell3D::OrientedContactPlugin::changeEnergy(), CompuCell3D::ContactMultiCadPlugin::changeEnergy(), CompuCell3D::ContactLocalProductPlugin::changeEnergy(), CompuCell3D::ContactLocalFlexPlugin::changeEnergy(), CompuCell3D::ContactPlugin::changeEnergy(), CompuCell3D::ConnectivityLocalFlexPlugin::changeEnergy(), CompuCell3D::ConnectivityPlugin::changeEnergy(), CompuCell3D::CompartmentPlugin::changeEnergy(), CompuCell3D::MitosisPlugin::doMitosis(), CompuCell3D::SurfaceTrackerPlugin::field3DChange(), CompuCell3D::BoundaryPixelTrackerPlugin::field3DChange(), CompuCell3D::NeighborTrackerPlugin::field3DChange(), CompuCell3D::GlobalBoundaryPixelTrackerPlugin::field3DChange(), CompuCell3D::SurfacePlugin::getNewOldSurfaceDiffs(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::KernelDiffusionSolver::initializeKernel(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::Potts3D::metropolisBoundaryWalker(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::ConnectivityLocalFlexPlugin::orderNeighborsClockwise(), CompuCell3D::ConnectivityPlugin::orderNeighborsClockwise(), prepareNeighborListsHex(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteOnContactSingleField(), and CompuCell3D::NeighborTrackerPlugin::testLatticeSanityFull().

float CompuCell3D::BoundaryStrategy::getMaxDistance (  )  [inline]

Definition at line 141 of file BoundaryStrategy.h.

Referenced by CompuCell3D::Potts3D::setDepth().

unsigned int BoundaryStrategy::getMaxNeighborIndexFromDepth ( float  depth  ) 

Definition at line 778 of file BoundaryStrategy.cpp.

References distanceVec, CompuCell3D::HEXAGONAL_LATTICE, hexDistanceArray, latticeType, CompuCell3D::Y_EVEN, and CompuCell3D::Z_EVEN.

Referenced by CompuCell3D::ConnectivityLocalFlexPlugin::initializeNeighborsOffsets(), CompuCell3D::ConnectivityPlugin::initializeNeighborsOffsets(), CompuCell3D::Potts3D::setDepth(), CompuCell3D::SurfaceTrackerPlugin::update(), CompuCell3D::BoundaryPixelTrackerPlugin::update(), CompuCell3D::OrientedContactPlugin::update(), CompuCell3D::GlobalBoundaryPixelTrackerPlugin::update(), CompuCell3D::ContactMultiCadPlugin::update(), CompuCell3D::ContactLocalProductPlugin::update(), CompuCell3D::ContactLocalFlexPlugin::update(), CompuCell3D::ContactPlugin::update(), and CompuCell3D::CompartmentPlugin::update().

unsigned int BoundaryStrategy::getMaxNeighborOrder (  ) 

Definition at line 683 of file BoundaryStrategy.cpp.

References getMaxNeighborIndexFromNeighborOrder().

Referenced by prepareNeighborListsBasedOnNeighborOrder().

unsigned int BoundaryStrategy::getMaxNeighborIndexFromNeighborOrder ( unsigned int  _neighborOrder  ) 

Definition at line 732 of file BoundaryStrategy.cpp.

References distanceVec, CompuCell3D::HEXAGONAL_LATTICE, hexDistanceArray, latticeType, CompuCell3D::Y_EVEN, and CompuCell3D::Z_EVEN.

Referenced by CompuCell3D::DiffusableVector2D< float >::allocateDiffusableFieldVector(), CompuCell3D::DiffusableVector< float >::allocateDiffusableFieldVector(), CompuCell3D::ConnectivityLocalFlexPlugin::changeEnergy(), CompuCell3D::ConnectivityPlugin::changeEnergy(), getMaxNeighborOrder(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::RearrangementPlugin::init(), CompuCell3D::RealPlasticityTrackerPlugin::init(), CompuCell3D::PlasticityTrackerPlugin::init(), CompuCell3D::NeighborTrackerPlugin::init(), CompuCell3D::MitosisSimplePlugin::init(), CompuCell3D::MitosisPlugin::init(), prepareNeighborListsHex(), CompuCell3D::Potts3D::setNeighborOrder(), CompuCell3D::SurfaceTrackerPlugin::update(), CompuCell3D::BoundaryPixelTrackerPlugin::update(), CompuCell3D::OrientedContactPlugin::update(), CompuCell3D::GlobalBoundaryPixelTrackerPlugin::update(), CompuCell3D::ContactMultiCadPlugin::update(), CompuCell3D::ContactLocalProductPlugin::update(), CompuCell3D::ContactLocalFlexPlugin::update(), CompuCell3D::ContactPlugin::update(), and CompuCell3D::CompartmentPlugin::update().

static void CompuCell3D::BoundaryStrategy::instantiate ( string  boundary_x,
string  boundary_y,
string  boundary_z,
string  alg,
int  index,
int  size,
string  inputfile,
LatticeType  latticeType = SQUARE_LATTICE 
) [inline, static]

Definition at line 158 of file BoundaryStrategy.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

void BoundaryStrategy::prepareNeighborListsBasedOnNeighborOrder ( unsigned int  _neighborOrder  ) 

Definition at line 705 of file BoundaryStrategy.cpp.

References getMaxNeighborOrder(), and prepareNeighborLists().

Referenced by CompuCell3D::KernelDiffusionSolver::init(), and CompuCell3D::Potts3D::setNeighborOrder().

void BoundaryStrategy::prepareNeighborLists ( float  _maxDistance = 4.0  ) 

Definition at line 661 of file BoundaryStrategy.cpp.

References dim, generateLatticeMultiplicativeFactors(), CompuCell3D::HEXAGONAL_LATTICE, latticeType, lmf, prepareNeighborListsHex(), and prepareNeighborListsSquare().

Referenced by prepareNeighborListsBasedOnNeighborOrder(), CompuCell3D::Potts3D::setDepth(), and setDim().

void BoundaryStrategy::prepareNeighborListsSquare ( float  _maxDistance = 4.0  ) 

Definition at line 623 of file BoundaryStrategy.cpp.

References xml_python_expat_1::a, dim, distanceVec, getOffsetsAndDistances(), neighborOrderIndexVec, offsetVec, CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by prepareNeighborLists().

void BoundaryStrategy::prepareNeighborListsHex ( float  _maxDistance = 4.0  ) 

Definition at line 368 of file BoundaryStrategy.cpp.

References xml_python_expat_1::a, dim, CompuCell3D::Neighbor::distance, getMaxNeighborIndexFromNeighborOrder(), getNeighborDirect(), getOffsetsAndDistances(), HexCoord(), hexDistanceArray, hexNeighborOrderIndexArray, hexOffsetArray, CompuCell3D::Point3D::x, CompuCell3D::X_EVEN, CompuCell3D::X_ODD, CompuCell3D::Point3D::y, CompuCell3D::Y_EVEN, CompuCell3D::Y_ODD, CompuCell3D::Point3D::z, CompuCell3D::Z_EVEN, and CompuCell3D::Z_ODD.

Referenced by prepareNeighborLists().

Coordinates3D< double > BoundaryStrategy::HexCoord ( const Point3D &  _pt  ) 

Definition at line 338 of file BoundaryStrategy.cpp.

References CompuCell3D::Point3D::x, CompuCell3D::Point3D::y, and CompuCell3D::Point3D::z.

Referenced by calculatePointCoordinates(), getNeighborDirect(), and prepareNeighborListsHex().

Coordinates3D< double > BoundaryStrategy::calculatePointCoordinates ( const Point3D &  _pt  ) 

Definition at line 355 of file BoundaryStrategy.cpp.

References CompuCell3D::HEXAGONAL_LATTICE, HexCoord(), latticeType, CompuCell3D::LatticeMultiplicativeFactors::lengthMF, lmf, CompuCell3D::Point3D::x, Coordinates3D< T >::x, CompuCell3D::Point3D::y, Coordinates3D< T >::y, CompuCell3D::Point3D::z, and Coordinates3D< T >::z.

Referenced by CompuCell3D::distInvariantCM(), CompuCell3D::CenterOfMassPlugin::field3DChange(), getNeighborDirect(), and CompuCell3D::precalculateCentroid().

bool BoundaryStrategy::precisionCompare ( float  _x,
float  _y,
float  _prec = 1e-6 
)

Definition at line 333 of file BoundaryStrategy.cpp.

static BoundaryStrategy* CompuCell3D::BoundaryStrategy::getInstance (  )  [inline, static]

Definition at line 187 of file BoundaryStrategy.h.

References ASSERT_OR_THROW.

Referenced by CompuCell3D::DiffusableVector2D< float >::allocateDiffusableFieldVector(), CompuCell3D::DiffusableVector< float >::allocateDiffusableFieldVector(), CompuCell3D::RealPlasticityPlugin::extraInit(), CompuCell3D::PlasticityPlugin::extraInit(), CompuCell3D::Potts3D::getLatticeType(), CompuCell3D::Field3D< precision >::getNeighbor(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::SurfaceTrackerPlugin::init(), CompuCell3D::StretchnessPlugin::init(), CompuCell3D::RearrangementPlugin::init(), CompuCell3D::RealPlasticityTrackerPlugin::init(), CompuCell3D::PlasticityTrackerPlugin::init(), CompuCell3D::NeighborTrackerPlugin::init(), CompuCell3D::MitosisSimplePlugin::init(), CompuCell3D::MitosisPlugin::init(), CompuCell3D::CenterOfMassPlugin::init(), CompuCell3D::KernelDiffusionSolver::initializeKernel(), CompuCell3D::ConnectivityLocalFlexPlugin::initializeNeighborsOffsets(), CompuCell3D::ConnectivityPlugin::initializeNeighborsOffsets(), CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::UniformFieldInitializer::layOutCells(), CompuCell3D::BlobFieldInitializer::layOutCells(), CompuCell3D::Potts3D::metropolisBoundaryWalker(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::Potts3D::metropolisList(), CompuCell3D::Potts3D::setDepth(), CompuCell3D::Field3DImpl< precision >::setDim(), CompuCell3D::Potts3D::setNeighborOrder(), CompuCell3D::SurfacePlugin::update(), CompuCell3D::BoundaryPixelTrackerPlugin::update(), CompuCell3D::OrientedContactPlugin::update(), CompuCell3D::GlobalBoundaryPixelTrackerPlugin::update(), CompuCell3D::ContactMultiCadPlugin::update(), CompuCell3D::ContactLocalProductPlugin::update(), CompuCell3D::ContactLocalFlexPlugin::update(), CompuCell3D::ContactPlugin::update(), and CompuCell3D::CompartmentPlugin::update().

static void CompuCell3D::BoundaryStrategy::destroy (  )  [inline, static]

Definition at line 204 of file BoundaryStrategy.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

Member Data Documentation

BoundaryStrategy * BoundaryStrategy::singleton [static, private]

Definition at line 69 of file BoundaryStrategy.h.

Referenced by ~BoundaryStrategy().

LatticeMultiplicativeFactors CompuCell3D::BoundaryStrategy::lmf [private]

Definition at line 71 of file BoundaryStrategy.h.

Referenced by calculatePointCoordinates(), getNeighborDirect(), and prepareNeighborLists().

Dim3D CompuCell3D::BoundaryStrategy::dim [private]

Definition at line 73 of file BoundaryStrategy.h.

Referenced by getNeighbor(), getNeighborDirect(), isValid(), prepareNeighborLists(), prepareNeighborListsHex(), prepareNeighborListsSquare(), and setDim().

int CompuCell3D::BoundaryStrategy::currentStep [private]

Definition at line 74 of file BoundaryStrategy.h.

Referenced by setCurrentStep().

bool CompuCell3D::BoundaryStrategy::regular [private]

Definition at line 75 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), getNeighbor(), getNeighborDirect(), and setIrregular().

Boundary* CompuCell3D::BoundaryStrategy::strategy_x [private]

Definition at line 76 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), getNeighbor(), getNeighborDirect(), and ~BoundaryStrategy().

Boundary* CompuCell3D::BoundaryStrategy::strategy_y [private]

Definition at line 77 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), getNeighbor(), getNeighborDirect(), and ~BoundaryStrategy().

Boundary* CompuCell3D::BoundaryStrategy::strategy_z [private]

Definition at line 78 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), getNeighbor(), getNeighborDirect(), and ~BoundaryStrategy().

Algorithm* CompuCell3D::BoundaryStrategy::algorithm [private]

Definition at line 80 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), getNumPixels(), isValid(), setCurrentStep(), and setDim().

std::vector<Point3D> CompuCell3D::BoundaryStrategy::offsetVec [private]

Definition at line 90 of file BoundaryStrategy.h.

Referenced by getNeighborDirect(), and prepareNeighborListsSquare().

std::vector<float> CompuCell3D::BoundaryStrategy::distanceVec [private]

Definition at line 91 of file BoundaryStrategy.h.

Referenced by getMaxNeighborIndexFromDepth(), getMaxNeighborIndexFromNeighborOrder(), getNeighborDirect(), and prepareNeighborListsSquare().

std::vector<unsigned int> CompuCell3D::BoundaryStrategy::neighborOrderIndexVec [private]

Definition at line 92 of file BoundaryStrategy.h.

Referenced by prepareNeighborListsSquare().

float CompuCell3D::BoundaryStrategy::maxDistance [private]

Definition at line 97 of file BoundaryStrategy.h.

bool CompuCell3D::BoundaryStrategy::neighborListsInitializedFlag [private]

Definition at line 98 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), and setDim().

std::vector<std::vector<Point3D> > CompuCell3D::BoundaryStrategy::hexOffsetArray [private]

Definition at line 110 of file BoundaryStrategy.h.

Referenced by getNeighborDirect(), and prepareNeighborListsHex().

std::vector<std::vector<float> > CompuCell3D::BoundaryStrategy::hexDistanceArray [private]

Definition at line 111 of file BoundaryStrategy.h.

Referenced by getMaxNeighborIndexFromDepth(), getMaxNeighborIndexFromNeighborOrder(), getNeighborDirect(), and prepareNeighborListsHex().

std::vector<std::vector<unsigned int> > CompuCell3D::BoundaryStrategy::hexNeighborOrderIndexArray [private]

Definition at line 113 of file BoundaryStrategy.h.

Referenced by prepareNeighborListsHex().

LatticeType CompuCell3D::BoundaryStrategy::latticeType [private]

Definition at line 115 of file BoundaryStrategy.h.

Referenced by BoundaryStrategy(), calculatePointCoordinates(), getMaxNeighborIndexFromDepth(), getMaxNeighborIndexFromNeighborOrder(), getNeighborDirect(), and prepareNeighborLists().

The documentation for this class was generated from the following files:
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