CompuCell3D::CellDiffusionDataOutput Class Reference

#include <CellDiffusionDataOutput.h>

Inheritance diagram for CompuCell3D::CellDiffusionDataOutput:

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Collaboration diagram for CompuCell3D::CellDiffusionDataOutput:

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List of all members.

Public Member Functions
	CellDiffusionDataOutput ()
virtual	~CellDiffusionDataOutput ()
void	setPotts (Potts3D *potts)
virtual void	init (Simulator *simulator)
virtual void	extraInit (Simulator *simulator)
virtual void	start ()
virtual void	step (const unsigned int currentStep)
virtual void	finish ()
virtual void	readXML (XMLPullParser &in)
virtual void	writeXML (XMLSerializer &out)
Private Attributes
Potts3D *	potts
CellInventory *	cellInventoryPtr
Dim3D	dim
std::string	fileName
bool	cellIDFlag
bool	deltaPositionFlag
std::vector< Coordinates3D < float > >	cellPositions
std::vector< long int >	cellIds
std::vector< CellG * >	cellIdsPtrs
std::vector< std::ofstream * >	filePtrVec

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Detailed Description

Definition at line 42 of file CellDiffusionDataOutput.h.

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Constructor & Destructor Documentation

CellDiffusionDataOutput::CellDiffusionDataOutput

(

)

Definition at line 51 of file CellDiffusionDataOutput.cpp.

References cellIDFlag, and deltaPositionFlag.

CellDiffusionDataOutput::~CellDiffusionDataOutput

(

)

[virtual]

Definition at line 60 of file CellDiffusionDataOutput.cpp.

References filePtrVec.

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Member Function Documentation

void CompuCell3D::CellDiffusionDataOutput::setPotts

(

Potts3D *

potts

)

[inline]

Definition at line 59 of file CellDiffusionDataOutput.h.

void CellDiffusionDataOutput::init

(

Simulator *

simulator

)

[virtual]

Definition at line 74 of file CellDiffusionDataOutput.cpp.

References cellInventoryPtr, CompuCell3D::Potts3D::getCellInventory(), CompuCell3D::Simulator::getPotts(), and potts.

void CellDiffusionDataOutput::extraInit

(

Simulator *

simulator

)

[virtual]

Reimplemented from CompuCell3D::SimObject.

Definition at line 79 of file CellDiffusionDataOutput.cpp.

void CellDiffusionDataOutput::start

(

)

[virtual]

Implements CompuCell3D::Steppable.

Definition at line 88 of file CellDiffusionDataOutput.cpp.

References ASSERT_OR_THROW, cellIds, cellIdsPtrs, CompuCell3D::CellInventory::cellInventoryEnd(), cellInventoryPtr, cellPositions, deltaPositionFlag, fileName, filePtrVec, CompuCell3D::CellInventory::find(), CompuCell3D::Simulator::pluginManager, CompuCell3D::CellG::volume, CompuCell3D::CellG::xCM, CompuCell3D::CellG::yCM, and CompuCell3D::CellG::zCM.

void CellDiffusionDataOutput::step

(

const unsigned int

currentStep

)

[virtual]

Implements CompuCell3D::Steppable.

Definition at line 144 of file CellDiffusionDataOutput.cpp.

References cellIdsPtrs, CompuCell3D::CellInventory::cellInventoryEnd(), cellInventoryPtr, cellPositions, deltaPositionFlag, filePtrVec, CompuCell3D::CellInventory::find(), CompuCell3D::CellG::id, CompuCell3D::CellG::volume, CompuCell3D::Point3D::x, CompuCell3D::CellG::xCM, CompuCell3D::Point3D::y, CompuCell3D::CellG::yCM, CompuCell3D::Point3D::z, and CompuCell3D::CellG::zCM.

virtual void CompuCell3D::CellDiffusionDataOutput::finish

(

)

[inline, virtual]

Implements CompuCell3D::Steppable.

Definition at line 68 of file CellDiffusionDataOutput.h.

void CellDiffusionDataOutput::readXML

(

XMLPullParser &

in

)

[virtual]

Definition at line 188 of file CellDiffusionDataOutput.cpp.

References cellIds, deltaPositionFlag, fileName, and BasicString::parseUInteger().

void CellDiffusionDataOutput::writeXML

(

XMLSerializer &

out

)

[virtual]

Definition at line 233 of file CellDiffusionDataOutput.cpp.

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Member Data Documentation

Potts3D* CompuCell3D::CellDiffusionDataOutput::potts [private]

Definition at line 43 of file CellDiffusionDataOutput.h.

Referenced by init().

CellInventory* CompuCell3D::CellDiffusionDataOutput::cellInventoryPtr [private]

Definition at line 44 of file CellDiffusionDataOutput.h.

Referenced by init(), start(), and step().

Dim3D CompuCell3D::CellDiffusionDataOutput::dim [private]

Definition at line 45 of file CellDiffusionDataOutput.h.

std::string CompuCell3D::CellDiffusionDataOutput::fileName [private]

Definition at line 47 of file CellDiffusionDataOutput.h.

Referenced by readXML(), and start().

bool CompuCell3D::CellDiffusionDataOutput::cellIDFlag [private]

Definition at line 48 of file CellDiffusionDataOutput.h.

Referenced by CellDiffusionDataOutput().

bool CompuCell3D::CellDiffusionDataOutput::deltaPositionFlag [private]

Definition at line 49 of file CellDiffusionDataOutput.h.

Referenced by CellDiffusionDataOutput(), readXML(), start(), and step().

std::vector<Coordinates3D<float> > CompuCell3D::CellDiffusionDataOutput::cellPositions [private]

Definition at line 50 of file CellDiffusionDataOutput.h.

Referenced by start(), and step().

std::vector<long int> CompuCell3D::CellDiffusionDataOutput::cellIds [private]

Definition at line 51 of file CellDiffusionDataOutput.h.

Referenced by readXML(), and start().

std::vector<CellG*> CompuCell3D::CellDiffusionDataOutput::cellIdsPtrs [private]

Definition at line 52 of file CellDiffusionDataOutput.h.

Referenced by start(), and step().

std::vector<std::ofstream *> CompuCell3D::CellDiffusionDataOutput::filePtrVec [private]

Definition at line 53 of file CellDiffusionDataOutput.h.

Referenced by start(), step(), and ~CellDiffusionDataOutput().

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/steppables/CellDiffusionDataOutput/CellDiffusionDataOutput.h
• CompuCell/DOXYGEN/core/CompuCell3D/steppables/CellDiffusionDataOutput/CellDiffusionDataOutput.cpp