CompuCell3D::CellG Class Reference

#include <Cell.h>

Collaboration diagram for CompuCell3D::CellG:

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List of all members.

Public Types

typedef unsigned char CellType_t

Public Member Functions

 CellG ()

Public Attributes

unsigned short volume
float targetVolume
float lambdaVolume
double surface
float targetSurface
float angle
float lambdaSurface
unsigned char type
unsigned char subtype
double xCM
double yCM
double zCM
float iXX
float iXY
float iXZ
float iYY
float iYZ
float iZZ
float lambdaVecX
float lambdaVecY
float lambdaVecZ
unsigned char flag
float averageConcentration
long id
long clusterId
BasicClassGroupextraAttribPtr
PyObjectpyAttrib


Detailed Description

A Potts3D cell.

Definition at line 40 of file Cell.h.


Member Typedef Documentation

typedef unsigned char CompuCell3D::CellG::CellType_t

Definition at line 42 of file Cell.h.


Constructor & Destructor Documentation

CompuCell3D::CellG::CellG (  )  [inline]

Definition at line 43 of file Cell.h.


Member Data Documentation

Definition at line 62 of file Cell.h.

Referenced by CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::SimpleVolumePlugin::changeEnergy(), CompuCell3D::FancyVolumePlugin::changeEnergy(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::VelocityPlugin::changeEnergy(), CompuCell3D::StretchnessPlugin::changeEnergy(), CompuCell3D::RealPlasticityPlugin::changeEnergy(), CompuCell3D::PlasticityPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::VolumePlugin::changeEnergyByCellId(), CompuCell3D::VolumePlugin::changeEnergyByCellType(), CompuCell3D::VolumePlugin::changeEnergyGlobal(), CompuCell3D::AdvectionDiffusionSolverFE::computeAverageCellRadius(), CompuCell3D::RealPlasticityPlugin::diffEnergyGlobal(), CompuCell3D::PlasticityPlugin::diffEnergyGlobal(), CompuCell3D::RealPlasticityPlugin::diffEnergyLocal(), CompuCell3D::PlasticityPlugin::diffEnergyLocal(), CompuCell3D::MitosisPlugin::doMitosis(), CompuCell3D::VolumeTrackerPlugin::field3DChange(), CompuCell3D::RealPlasticityTrackerPlugin::field3DChange(), CompuCell3D::PlasticityTrackerPlugin::field3DChange(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::MitosisPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_yz(), CompuCell3D::LengthConstraintPlugin::field3DChange_yz(), CC3DTransaction::fillPressureVolumeFlexPy(), CompuCell3D::CenterOfMassPlugin::getCenterOfMass(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::MomentOfInertiaPlugin::getMomentOfInertia(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::UniformFieldInitializer::initializeCellTypes(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), Display3DBase::paintCellVectorFieldLattice(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::CellDiffusionDataOutput::start(), CompuCell3D::VolumeMean::step(), CompuCell3D::FoamDataOutput::step(), CompuCell3D::CellDiffusionDataOutput::step(), and CompuCell3D::CellVelocity::updateCOMList().

Definition at line 64 of file Cell.h.

Referenced by CompuCell3D::VolumePlugin::changeEnergyByCellId().

Definition at line 66 of file Cell.h.

Referenced by CompuCell3D::SurfacePlugin::changeEnergyByCellId().

Definition at line 67 of file Cell.h.

Definition at line 68 of file Cell.h.

Referenced by CompuCell3D::SurfacePlugin::changeEnergyByCellId().

unsigned char CompuCell3D::CellG::type

Definition at line 69 of file Cell.h.

Referenced by CompuCell3D::BoxWatcher::adjustBox(), CompuCell3D::NeighborStickPlugin::changeEnergy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::VolumePlugin::changeEnergyByCellType(), CompuCell3D::SurfacePlugin::changeEnergyByCellType(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellType(), CompuCell3D::ContactMultiCadPlugin::contactEnergy(), CompuCell3D::ContactPlugin::contactEnergy(), CompuCell3D::CompartmentPlugin::contactEnergy(), CompuCell3D::ContactLocalProductPlugin::contactSpecificity(), CompuCell3D::ContactLocalFlexPlugin::defaultContactEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse(), CompuCell3D::FastDiffusionSolver2DFE::diffuseSingleField(), CompuCell3D::AdvectionDiffusionSolverFE::diffuseSingleField(), CompuCell3D::RealPlasticityTrackerPlugin::field3DChange(), CompuCell3D::PlasticityTrackerPlugin::field3DChange(), CompuCell3D::PixelTrackerPlugin::field3DChange(), CompuCell3D::BoundaryPixelTrackerPlugin::field3DChange(), CompuCell3D::Automaton::field3DChange(), CC3DTransaction::fillField3D(), CompuCell3D::CellTypePlugin::getCellType(), CompuCell3D::UniformFieldInitializer::initializeCellTypes(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), CompuCell3D::BlobFieldInitializer::initializeCellTypesCellSort(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::initializeConcentration(), CompuCell3D::BlobFieldInitializer::initializeEngulfment(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::CompartmentPlugin::internalEnergy(), CompuCell3D::UniformFieldInitializer::layOutCells(), CompuCell3D::BlobFieldInitializer::layOutCells(), CompuCell3D::ChemotaxisPlugin::merksChemotaxis(), CompuCell3D::Potts3D::metropolisBoundaryWalker(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::Potts3D::metropolisList(), CompuCell3D::ChemotaxisData::okToChemotact(), CompuCell3D::OrientedContactPlugin::orientedContactEnergy(), CompuCell3D::ChemotaxisPlugin::regularChemotaxis(), CompuCell3D::FastDiffusionSolver2DFE::secreteConstantConcentrationSingleField(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteOnContactSingleField(), CompuCell3D::AdvectionDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteSingleField(), CompuCell3D::AdvectionDiffusionSolverFE::secreteSingleField(), CompuCell3D::TypeTransition::setType(), CompuCell3D::PIFDumper::step(), CompuCell3D::CellType::update(), and CompuCell3D::MitosisPlugin::updateAttributes().

Definition at line 70 of file Cell.h.

Definition at line 71 of file Cell.h.

Referenced by CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::RealPlasticityPlugin::changeEnergy(), CompuCell3D::PlasticityPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintPlugin::field3DChange_xz(), CompuCell3D::CenterOfMassPlugin::getCenterOfMass(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::MomentOfInertiaPlugin::getMomentOfInertia(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::UniformFieldInitializer::initializeCellTypes(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), Display3DBase::paintCellVectorFieldLattice(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::CellDiffusionDataOutput::start(), CompuCell3D::CellDiffusionDataOutput::step(), and CompuCell3D::CellVelocity::updateCOMList().

Definition at line 71 of file Cell.h.

Referenced by CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::RealPlasticityPlugin::changeEnergy(), CompuCell3D::PlasticityPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_yz(), CompuCell3D::LengthConstraintPlugin::field3DChange_yz(), CompuCell3D::CenterOfMassPlugin::getCenterOfMass(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::MomentOfInertiaPlugin::getMomentOfInertia(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::UniformFieldInitializer::initializeCellTypes(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), Display3DBase::paintCellVectorFieldLattice(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::CellDiffusionDataOutput::start(), CompuCell3D::CellDiffusionDataOutput::step(), and CompuCell3D::CellVelocity::updateCOMList().

Definition at line 71 of file Cell.h.

Referenced by CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::RealPlasticityPlugin::changeEnergy(), CompuCell3D::PlasticityPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_yz(), CompuCell3D::LengthConstraintPlugin::field3DChange_yz(), CompuCell3D::CenterOfMassPlugin::getCenterOfMass(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::MomentOfInertiaPlugin::getMomentOfInertia(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::UniformFieldInitializer::initializeCellTypes(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), Display3DBase::paintCellVectorFieldLattice(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::CellDiffusionDataOutput::start(), CompuCell3D::CellDiffusionDataOutput::step(), and CompuCell3D::CellVelocity::updateCOMList().

Definition at line 73 of file Cell.h.

Referenced by CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId().

Definition at line 73 of file Cell.h.

Referenced by CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId().

Definition at line 73 of file Cell.h.

Referenced by CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId().

unsigned char CompuCell3D::CellG::flag

Definition at line 74 of file Cell.h.

Referenced by CC3DTransaction::fillField3D().

Definition at line 75 of file Cell.h.

Referenced by CC3DTransaction::fillField3D().

Definition at line 78 of file Cell.h.

Referenced by CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::VelocityPlugin::changeEnergy(), CompuCell3D::RealPlasticityPlugin::changeEnergy(), CompuCell3D::PlasticityPlugin::changeEnergy(), CompuCell3D::NeighborStickPlugin::changeEnergy(), CompuCell3D::ConnectivityLocalFlexPlugin::changeEnergy(), CompuCell3D::ChemotaxisDictyPlugin::changeEnergy(), CompuCell3D::CellOrientationPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::ContactLocalFlexPlugin::contactEnergy(), CompuCell3D::ContactMultiCadPlugin::contactEnergyLinear(), CompuCell3D::ContactLocalProductPlugin::contactEnergyLinear(), CompuCell3D::ContactLocalProductPlugin::contactEnergyMin(), CompuCell3D::ContactLocalProductPlugin::contactEnergyQuadratic(), CompuCell3D::Potts3D::destroyCellG(), CompuCell3D::AdvectionDiffusionSolverFE::diffuseSingleField(), CompuCell3D::RealPlasticityTrackerPlugin::field3DChange(), CompuCell3D::PlasticityTrackerPlugin::field3DChange(), CompuCell3D::PixelTrackerPlugin::field3DChange(), CompuCell3D::BoundaryPixelTrackerPlugin::field3DChange(), CompuCell3D::NeighborTrackerPlugin::field3DChange(), CompuCell3D::CellInstantVelocityPlugin::field3DChange(), CompuCell3D::CellBoundaryTrackerPlugin::field3DChange(), CC3DTransaction::fillVelocity(), CompuCell3D::ContactLocalProductPlugin::getJVecValue(), CompuCell3D::CellOrientationPlugin::getLambdaCellOrientation(), CompuCell3D::ContactLocalFlexPlugin::initializeContactLocalFlexData(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::AdvectionDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::ConnectivityLocalFlexPlugin::setConnectivityStrength(), CompuCell3D::ContactLocalProductPlugin::setJVecValue(), CompuCell3D::CellOrientationPlugin::setLambdaCellOrientation(), CompuCell3D::LengthConstraintLocalFlexPlugin::setLengthConstraintData(), CompuCell3D::PolarizationVectorPlugin::setPolarizationVecetor(), CompuCell3D::FoamDataOutput::step(), CompuCell3D::DictyChemotaxisSteppable::step(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanity(), CompuCell3D::NeighborTrackerPlugin::testLatticeSanityFull(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanityFull(), CompuCell3D::CellVelocity::updateCOMList(), and CompuCell3D::ContactLocalFlexPlugin::updateContactEnergyData().


The documentation for this class was generated from the following file:

Generated on Thu Dec 4 11:42:42 2008 for CompuCell3D by  doxygen 1.5.6