CompuCell3D::ConcentrationPlugin Class Reference

#include <ConcentrationPlugin.h>

Inheritance diagram for CompuCell3D::ConcentrationPlugin:

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Collaboration diagram for CompuCell3D::ConcentrationPlugin:

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List of all members.

Public Member Functions
	ConcentrationPlugin ()
virtual	~ConcentrationPlugin ()
BasicClassAccessor < Concentration > *	getConcentrationAccessorPtr ()
virtual void	init (Simulator *simulator)
void	setConcentrationFieldPtr (Field3DImpl< float > *_concentrationFieldPtr)
virtual void	field3DChange (const Point3D &pt, CellG *newCell, CellG *oldCell)
	CellChangeWatcher interface.
virtual void	step ()
virtual void	readXML (XMLPullParser &in)
virtual void	writeXML (XMLSerializer &out)
Private Attributes
BasicClassAccessor< Concentration >	concentrationAccessor
Field3DImpl< float > *	concentrationFieldPtr
Potts3D *	potts

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Detailed Description

Definition at line 44 of file ConcentrationPlugin.h.

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Constructor & Destructor Documentation

ConcentrationPlugin::ConcentrationPlugin

(

)

Definition at line 35 of file ConcentrationPlugin.cpp.

ConcentrationPlugin::~ConcentrationPlugin

(

)

[virtual]

Definition at line 37 of file ConcentrationPlugin.cpp.

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Member Function Documentation

BasicClassAccessor<Concentration>* CompuCell3D::ConcentrationPlugin::getConcentrationAccessorPtr

(

)

[inline]

Definition at line 58 of file ConcentrationPlugin.h.

References concentrationAccessor.

void ConcentrationPlugin::init

(

Simulator *

simulator

)

[virtual]

Definition at line 39 of file ConcentrationPlugin.cpp.

References concentrationAccessor, CompuCell3D::Potts3D::getCellFactoryGroupPtr(), CompuCell3D::Simulator::getPotts(), potts, CompuCell3D::Potts3D::registerCellGChangeWatcher(), BasicClassGroupFactory::registerClass(), and CompuCell3D::Potts3D::registerStepper().

void CompuCell3D::ConcentrationPlugin::setConcentrationFieldPtr

(

Field3DImpl< float > *

_concentrationFieldPtr

)

[inline]

Definition at line 62 of file ConcentrationPlugin.h.

References concentrationFieldPtr.

void ConcentrationPlugin::field3DChange	(	const Point3D &	pt,
		CellG *	newCell,
		CellG *	oldCell
	)			[virtual]

CellChangeWatcher interface.

although currently main updating of cumulative concentration and decision whether to kill cell is made in target volume steppable we still may need at some poit to start making the decision in this plugin so I leave code that updates cumulative concentration here It will be just comented out

Definition at line 51 of file ConcentrationPlugin.cpp.

void ConcentrationPlugin::step

(

)

[virtual]

Implements CompuCell3D::Stepper.

Definition at line 71 of file ConcentrationPlugin.cpp.

void ConcentrationPlugin::readXML

(

XMLPullParser &

in

)

[virtual]

Definition at line 74 of file ConcentrationPlugin.cpp.

void ConcentrationPlugin::writeXML

(

XMLSerializer &

out

)

[virtual]

Definition at line 78 of file ConcentrationPlugin.cpp.

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Member Data Documentation

BasicClassAccessor<Concentration> CompuCell3D::ConcentrationPlugin::concentrationAccessor [private]

Definition at line 47 of file ConcentrationPlugin.h.

Referenced by getConcentrationAccessorPtr(), and init().

Field3DImpl<float>* CompuCell3D::ConcentrationPlugin::concentrationFieldPtr [private]

Definition at line 50 of file ConcentrationPlugin.h.

Referenced by setConcentrationFieldPtr().

Potts3D* CompuCell3D::ConcentrationPlugin::potts [private]

Definition at line 51 of file ConcentrationPlugin.h.

Referenced by init().

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Concentration/ConcentrationPlugin.h
• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Concentration/ConcentrationPlugin.cpp