CompuCell3D::GrowthPlugin Class Reference

#include <GrowthPlugin.h>

Inheritance diagram for CompuCell3D::GrowthPlugin:

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Collaboration diagram for CompuCell3D::GrowthPlugin:

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List of all members.

Public Member Functions
	GrowthPlugin ()
virtual	~GrowthPlugin ()
virtual void	init (Simulator *simulator)
virtual void	extraInit (Simulator *simulator)
virtual void	field3DChange (const Point3D &pt, CellG *newCell, CellG *oldCell)
double	FGF (int)
double	getFGFThreshold ()
void	grow ()
virtual void	step ()
virtual void	readXML (XMLPullParser &in)
virtual void	writeXML (XMLSerializer &out)
Private Attributes
Simulator *	sim
Potts3D *	potts
unsigned int	delay
unsigned int	delta
int	evolution
int	numcellpixels
double	density
unsigned int	currstep
double	dThreshold
double	fgfThreshold
bool	dTrigger
MitosisPlugin *	mitosisPlugin
Dim3D	dim
std::string	autoName
int	stopaer
int	zAER

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Detailed Description

Definition at line 41 of file GrowthPlugin.h.

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Constructor & Destructor Documentation

GrowthPlugin::GrowthPlugin

(

)

Definition at line 48 of file GrowthPlugin.cpp.

References stopaer, and zAER.

GrowthPlugin::~GrowthPlugin

(

)

[virtual]

Definition at line 53 of file GrowthPlugin.cpp.

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Member Function Documentation

void GrowthPlugin::init

(

Simulator *

simulator

)

[virtual]

Definition at line 55 of file GrowthPlugin.cpp.

References currstep, density, dTrigger, evolution, CompuCell3D::Simulator::getPotts(), mitosisPlugin, numcellpixels, CompuCell3D::Simulator::pluginManager, potts, CompuCell3D::Potts3D::registerCellGChangeWatcher(), CompuCell3D::Potts3D::registerStepper(), and sim.

void GrowthPlugin::extraInit

(

Simulator *

simulator

)

[virtual]

Reimplemented from CompuCell3D::SimObject.

Definition at line 80 of file GrowthPlugin.cpp.

References sim.

void GrowthPlugin::field3DChange	(	const Point3D &	pt,
		CellG *	newCell,
		CellG *	oldCell
	)			[virtual]

Definition at line 99 of file GrowthPlugin.cpp.

References density, CompuCell3D::Potts3D::getCellFieldG(), numcellpixels, and potts.

double GrowthPlugin::FGF

(

int

z

)

Definition at line 89 of file GrowthPlugin.cpp.

References dim, fgfThreshold, CompuCell3D::Potts3D::getCellFieldG(), potts, CompuCell3D::Point3D::z, and zAER.

Referenced by CompuCell3D::ChickGrowthCondensingTransition::checkCondition().

double GrowthPlugin::getFGFThreshold

(

)

Definition at line 85 of file GrowthPlugin.cpp.

References fgfThreshold.

Referenced by CompuCell3D::ChickGrowthCondensingTransition::checkCondition().

void GrowthPlugin::grow

(

)

Definition at line 110 of file GrowthPlugin.cpp.

References delta, CompuCell3D::Potts3D::getCellFieldG(), potts, and zAER.

Referenced by step().

void GrowthPlugin::step

(

)

[virtual]

Implements CompuCell3D::Stepper.

Definition at line 118 of file GrowthPlugin.cpp.

References currstep, delay, density, dim, dThreshold, dTrigger, evolution, CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::Simulator::getStep(), grow(), mitosisPlugin, potts, sim, CompuCell3D::MitosisPlugin::turnOff(), and CompuCell3D::MitosisPlugin::turnOn().

void GrowthPlugin::readXML

(

XMLPullParser &

in

)

[virtual]

Definition at line 149 of file GrowthPlugin.cpp.

References ASSERT_OR_THROW, delay, delta, dim, dThreshold, fgfThreshold, BasicString::parseDouble(), BasicString::parseInteger(), BasicString::parseUInteger(), stopaer, and THROW.

void GrowthPlugin::writeXML

(

XMLSerializer &

out

)

[virtual]

Definition at line 182 of file GrowthPlugin.cpp.

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Member Data Documentation

Simulator* CompuCell3D::GrowthPlugin::sim [private]

Definition at line 45 of file GrowthPlugin.h.

Referenced by extraInit(), init(), and step().

Potts3D* CompuCell3D::GrowthPlugin::potts [private]

Definition at line 46 of file GrowthPlugin.h.

Referenced by FGF(), field3DChange(), grow(), init(), and step().

unsigned int CompuCell3D::GrowthPlugin::delay [private]

Definition at line 48 of file GrowthPlugin.h.

Referenced by readXML(), and step().

unsigned int CompuCell3D::GrowthPlugin::delta [private]

Definition at line 49 of file GrowthPlugin.h.

Referenced by grow(), and readXML().

int CompuCell3D::GrowthPlugin::evolution [private]

Definition at line 50 of file GrowthPlugin.h.

Referenced by init(), and step().

int CompuCell3D::GrowthPlugin::numcellpixels [private]

Definition at line 52 of file GrowthPlugin.h.

Referenced by field3DChange(), and init().

double CompuCell3D::GrowthPlugin::density [private]

Definition at line 53 of file GrowthPlugin.h.

Referenced by field3DChange(), init(), and step().

unsigned int CompuCell3D::GrowthPlugin::currstep [private]

Definition at line 54 of file GrowthPlugin.h.

Referenced by init(), and step().

double CompuCell3D::GrowthPlugin::dThreshold [private]

Definition at line 56 of file GrowthPlugin.h.

Referenced by readXML(), and step().

double CompuCell3D::GrowthPlugin::fgfThreshold [private]

Definition at line 57 of file GrowthPlugin.h.

Referenced by FGF(), getFGFThreshold(), and readXML().

bool CompuCell3D::GrowthPlugin::dTrigger [private]

Definition at line 58 of file GrowthPlugin.h.

Referenced by init(), and step().

MitosisPlugin* CompuCell3D::GrowthPlugin::mitosisPlugin [private]

Definition at line 60 of file GrowthPlugin.h.

Referenced by init(), and step().

Dim3D CompuCell3D::GrowthPlugin::dim [private]

Definition at line 62 of file GrowthPlugin.h.

Referenced by FGF(), readXML(), and step().

std::string CompuCell3D::GrowthPlugin::autoName [private]

Definition at line 63 of file GrowthPlugin.h.

int CompuCell3D::GrowthPlugin::stopaer [private]

Definition at line 65 of file GrowthPlugin.h.

Referenced by GrowthPlugin(), and readXML().

int CompuCell3D::GrowthPlugin::zAER [private]

Definition at line 66 of file GrowthPlugin.h.

Referenced by FGF(), grow(), and GrowthPlugin().

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Growth/GrowthPlugin.h
• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Growth/GrowthPlugin.cpp