CompuCell3D::MitosisPlugin Class Reference

#include <MitosisPlugin.h>

Inheritance diagram for CompuCell3D::MitosisPlugin:

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Collaboration diagram for CompuCell3D::MitosisPlugin:

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List of all members.

Public Member Functions
	MitosisPlugin ()
virtual	~MitosisPlugin ()
virtual void	init (Simulator *simulator, CC3DXMLElement *_xmlData=0)
virtual void	field3DChange (const Point3D &pt, CellG *newCell, CellG *oldCell)
virtual void	step ()
virtual void	update (CC3DXMLElement *_xmlData, bool _fullInitFlag=false)
virtual std::string	steerableName ()
virtual std::string	toString ()
virtual void	turnOn ()
virtual void	turnOff ()
virtual bool	doMitosis ()
virtual void	updateAttributes ()
	actually does mitosis - returns true if mitosis was done , false otherwise
CellG *	getChildCell ()
	updates some of the cell attributes
CellG *	getParentCell ()
void	setPotts (Potts3D *_potts)
unsigned int	getDoublingVolume ()
void	setDoublingVolume (unsigned int _doublingVolume)
Protected Attributes
Potts3D *	potts
unsigned int	doublingVolume
CellG *	childCell
CellG *	parentCell
Point3D	splitPt
bool	split
bool	on
BasicArray< Point3D >	arrays [2]
unsigned int	maxNeighborIndex
BoundaryStrategy *	boundaryStrategy

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Detailed Description

Definition at line 41 of file MitosisPlugin.h.

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Constructor & Destructor Documentation

MitosisPlugin::MitosisPlugin

(

)

Definition at line 44 of file MitosisPlugin.cpp.

References potts, and split.

MitosisPlugin::~MitosisPlugin

(

)

[virtual]

Definition at line 46 of file MitosisPlugin.cpp.

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Member Function Documentation

void MitosisPlugin::init	(	Simulator *	simulator,
		CC3DXMLElement *	_xmlData = 0
	)			[virtual]

Reimplemented from CompuCell3D::SimObject.

Reimplemented in CompuCell3D::MitosisSimplePlugin.

Definition at line 48 of file MitosisPlugin.cpp.

References boundaryStrategy, CompuCell3D::BoundaryStrategy::getInstance(), CompuCell3D::BoundaryStrategy::getMaxNeighborIndexFromNeighborOrder(), CompuCell3D::Simulator::getPotts(), CompuCell3D::SimObject::init(), maxNeighborIndex, SimpleVolumeCallFromPython::plugin, CompuCell3D::Simulator::pluginManager, potts, CompuCell3D::Potts3D::registerCellGChangeWatcher(), CompuCell3D::Simulator::registerSteerableObject(), CompuCell3D::Potts3D::registerStepper(), turnOn(), and update().

void MitosisPlugin::field3DChange	(	const Point3D &	pt,
		CellG *	newCell,
		CellG *	oldCell
	)			[virtual]

Definition at line 80 of file MitosisPlugin.cpp.

References doublingVolume, split, splitPt, and CompuCell3D::CellG::volume.

void MitosisPlugin::step

(

)

[virtual]

Implements CompuCell3D::Stepper.

Definition at line 104 of file MitosisPlugin.cpp.

References doMitosis(), and updateAttributes().

void MitosisPlugin::update	(	CC3DXMLElement *	_xmlData,
		bool	_fullInitFlag = false
	)			[virtual]

Reimplemented from CompuCell3D::SteerableObject.

Definition at line 73 of file MitosisPlugin.cpp.

References doublingVolume, CC3DXMLElement::getFirstElement(), and CC3DXMLElement::getUInt().

Referenced by init().

std::string MitosisPlugin::steerableName

(

)

[virtual]

Reimplemented from CompuCell3D::SteerableObject.

Definition at line 244 of file MitosisPlugin.cpp.

References toString().

std::string MitosisPlugin::toString

(

)

[virtual]

Reimplemented from CompuCell3D::Plugin.

Definition at line 239 of file MitosisPlugin.cpp.

Referenced by steerableName().

void MitosisPlugin::turnOn

(

)

[virtual]

Definition at line 101 of file MitosisPlugin.cpp.

References on.

Referenced by CompuCell3D::MitosisSimplePlugin::init(), init(), and CompuCell3D::GrowthPlugin::step().

void MitosisPlugin::turnOff

(

)

[virtual]

Definition at line 102 of file MitosisPlugin.cpp.

References on.

Referenced by CompuCell3D::GrowthPlugin::step().

bool MitosisPlugin::doMitosis

(

)

[virtual]

Definition at line 124 of file MitosisPlugin.cpp.

References ASSERT_OR_THROW, boundaryStrategy, childCell, CompuCell3D::Potts3D::createCellG(), CompuCell3D::Neighbor::distance, distance(), CompuCell3D::Field3DImpl< T >::get(), CompuCell3D::Potts3D::getCellFieldG(), CompuCell3D::BoundaryStrategy::getNeighborDirect(), maxNeighborIndex, on, parentCell, potts, CompuCell3D::Neighbor::pt, CompuCell3D::WatchableField3D< T >::set(), split, splitPt, and CompuCell3D::CellG::volume.

Referenced by step().

void MitosisPlugin::updateAttributes

(

)

[virtual]

actually does mitosis - returns true if mitosis was done , false otherwise

copying type and target volume of the parent cell to the new cell

Definition at line 117 of file MitosisPlugin.cpp.

References childCell, parentCell, CompuCell3D::CellG::targetVolume, and CompuCell3D::CellG::type.

Referenced by step().

CellG * MitosisPlugin::getChildCell

(

)

updates some of the cell attributes

Definition at line 113 of file MitosisPlugin.cpp.

References childCell.

CellG * MitosisPlugin::getParentCell

(

)

Definition at line 114 of file MitosisPlugin.cpp.

References parentCell.

void CompuCell3D::MitosisPlugin::setPotts

(

Potts3D *

_potts

)

[inline]

Definition at line 87 of file MitosisPlugin.h.

unsigned int CompuCell3D::MitosisPlugin::getDoublingVolume

(

)

[inline]

Definition at line 89 of file MitosisPlugin.h.

void CompuCell3D::MitosisPlugin::setDoublingVolume

(

unsigned int

_doublingVolume

)

[inline]

Definition at line 90 of file MitosisPlugin.h.

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Member Data Documentation

Potts3D* CompuCell3D::MitosisPlugin::potts [protected]

Definition at line 44 of file MitosisPlugin.h.

Referenced by doMitosis(), CompuCell3D::MitosisSimplePlugin::init(), init(), MitosisPlugin(), and CompuCell3D::MitosisSimplePlugin::MitosisSimplePlugin().

unsigned int CompuCell3D::MitosisPlugin::doublingVolume [protected]

Definition at line 46 of file MitosisPlugin.h.

Referenced by field3DChange(), and update().

CellG* CompuCell3D::MitosisPlugin::childCell [protected]

Definition at line 48 of file MitosisPlugin.h.

Referenced by doMitosis(), getChildCell(), and updateAttributes().

CellG* CompuCell3D::MitosisPlugin::parentCell [protected]

Definition at line 49 of file MitosisPlugin.h.

Referenced by doMitosis(), getParentCell(), and updateAttributes().

Point3D CompuCell3D::MitosisPlugin::splitPt [protected]

Definition at line 51 of file MitosisPlugin.h.

Referenced by doMitosis(), and field3DChange().

bool CompuCell3D::MitosisPlugin::split [protected]

Definition at line 52 of file MitosisPlugin.h.

Referenced by doMitosis(), field3DChange(), and MitosisPlugin().

bool CompuCell3D::MitosisPlugin::on [protected]

Definition at line 53 of file MitosisPlugin.h.

Referenced by doMitosis(), turnOff(), and turnOn().

BasicArray<Point3D> CompuCell3D::MitosisPlugin::arrays[2] [protected]

Definition at line 55 of file MitosisPlugin.h.

unsigned int CompuCell3D::MitosisPlugin::maxNeighborIndex [protected]

Definition at line 56 of file MitosisPlugin.h.

Referenced by doMitosis(), CompuCell3D::MitosisSimplePlugin::init(), and init().

BoundaryStrategy* CompuCell3D::MitosisPlugin::boundaryStrategy [protected]

Definition at line 57 of file MitosisPlugin.h.

Referenced by doMitosis(), CompuCell3D::MitosisSimplePlugin::init(), and init().

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The documentation for this class was generated from the following files:

• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Mitosis/MitosisPlugin.h
• CompuCell/DOXYGEN/core/CompuCell3D/plugins/Mitosis/MitosisPlugin.cpp