CompuCell3D::Point3D Class Reference

#include <Point3D.h>

Inheritance diagram for CompuCell3D::Point3D:

Inheritance graph
[legend]

List of all members.

Public Member Functions

 Point3D ()
 Point3D (const short x, const short y, const short z)
 Point3D (const Point3D &pt)
Point3D & operator= (const Point3D pt)
Point3D & operator+= (const Point3D pt)
Point3D & operator-= (const Point3D pt)
bool operator== (const Point3D pt) const
 Comparison operator.
bool operator!= (const Point3D pt) const
 Not equal operator.
bool operator< (const Point3D _rhs) const

Public Attributes

short x
short y
short z

Friends

std::ostream & operator<< (std::ostream &stream, const Point3D &pt)

Detailed Description

A 3D point.

Definition at line 38 of file Point3D.h.

Constructor & Destructor Documentation

CompuCell3D::Point3D::Point3D (  )  [inline]

Construct a point at the origin.

Definition at line 47 of file Point3D.h.

CompuCell3D::Point3D::Point3D ( const short  x,
const short  y,
const short  z 
) [inline]

Definition at line 49 of file Point3D.h.

CompuCell3D::Point3D::Point3D ( const Point3D &  pt  )  [inline]

Copy constructor

Definition at line 55 of file Point3D.h.

Member Function Documentation

Point3D& CompuCell3D::Point3D::operator= ( const Point3D  pt  )  [inline]

Assignment operator.

Definition at line 60 of file Point3D.h.

References x, y, and z.

Point3D& CompuCell3D::Point3D::operator+= ( const Point3D  pt  )  [inline]

Add the coordinates of pt to this Point3D.

Definition at line 70 of file Point3D.h.

References x, y, and z.

Point3D& CompuCell3D::Point3D::operator-= ( const Point3D  pt  )  [inline]

Subtract the coordinates of pt to this Point3D.

Definition at line 80 of file Point3D.h.

References x, y, and z.

bool CompuCell3D::Point3D::operator== ( const Point3D  pt  )  const [inline]

Comparison operator.

Definition at line 88 of file Point3D.h.

References x, y, and z.

bool CompuCell3D::Point3D::operator!= ( const Point3D  pt  )  const [inline]

Not equal operator.

Definition at line 92 of file Point3D.h.

bool CompuCell3D::Point3D::operator< ( const Point3D  _rhs  )  const [inline]

Definition at line 97 of file Point3D.h.

References x, y, and z.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  stream,
const Point3D &  pt 
) [friend]

Print a Point3D to a std::ostream. The format is (x,y,z).

Definition at line 113 of file Point3D.h.

Member Data Documentation

short CompuCell3D::Point3D::x

Definition at line 40 of file Point3D.h.

Referenced by CompuCell3D::NeighborFinder::addNeighbors(), CompuCell3D::BoxWatcher::adjustBox(), CompuCell3D::BoxWatcher::adjustCoordinates(), CompuCell3D::Array3D< T >::allocateArray(), CompuCell3D::Array2DBorders< T >::allocateMemory(), CompuCell3D::Array3DBorders< T >::allocateMemory(), Display3DBase::belongsToField(), CompuCell3D::DictyFieldInitializer::belongToZone(), CompuCell3D::FastDiffusionSolver2DFE::boundaryConditionInit(), CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::BoundaryStrategy::calculatePointCoordinates(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::AdvectionDiffusionSolverFE::cellMap2Field(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::VelocityPlugin::changeEnergy(), CompuCell3D::CellOrientationPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellType(), CompuCell3D::ExternalPotentialPlugin::changeEnergyGlobal(), CompuCell3D::BoundaryStrategy::checkIfOffsetAlreadyStacked(), CC3DTransaction::createFloatFieldPy(), CC3DTransaction::createPreasureFields(), CC3DTransaction::createVectorCellFields(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse(), CompuCell3D::FastDiffusionSolver2DFE::diffuseSingleField(), CompuCell3D::distanceVectorInvariant(), CompuCell3D::distInvariantCM(), CompuCell3D::CellVelocity::extraInit(), CompuCell3D::PlayerSettingsPlugin::extraInit(), CompuCell3D::AdvectionDiffusionSolverFE::field2CellMap(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintPlugin::field3DChange_xz(), CompuCell3D::Field3DImpl< precision >::Field3DImpl(), CC3DTransaction::fillField3D(), CC3DTransaction::fillPressureVolumeFlexPy(), CC3DTransaction::fillVelocity(), CompuCell3D::Array2DBorders< T >::freeMemory(), CompuCell3D::Array3DBorders< T >::freeMemory(), CompuCell3D::BoundaryStrategy::generateLatticeMultiplicativeFactors(), CompuCell3D::BlobFieldInitializer::getBlobDimensions(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::BoundaryStrategy::getNeighbor(), CompuCell3D::BoundaryStrategy::getNeighborDirect(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::BoundaryStrategy::HexCoord(), CompuCell3D::Field3DIndex::index(), CompuCell3D::DefaultAlgorithm::inGrid(), CompuCell3D::ChengbangAlgorithm::inGrid(), CompuCell3D::UniformFieldInitializer::init(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::init(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::FlexibleDiffusionSolverFE::init(), CompuCell3D::FlexibleDiffusionSolverADE::init(), CompuCell3D::FastDiffusionSolver2DFE::init(), CompuCell3D::AdvectionDiffusionSolverFE::init(), CompuCell3D::DictyFieldInitializer::init(), CompuCell3D::BoxWatcher::init(), CompuCell3D::BlobFieldInitializer::init(), CompuCell3D::VelocityPlugin::init(), CompuCell3D::MomentOfInertiaPlugin::init(), CompuCell3D::LengthConstraintLocalFlexPlugin::init(), CompuCell3D::LengthConstraintPlugin::init(), CompuCell3D::CenterOfMassPlugin::init(), CompuCell3D::CellInstantVelocityPlugin::init(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::initializeConcentration(), CompuCell3D::BlobFieldInitializer::initializeEngulfment(), CompuCell3D::KernelDiffusionSolver::initializeKernel(), CompuCell3D::ConnectivityLocalFlexPlugin::initializeNeighborsOffsets(), CompuCell3D::ConnectivityPlugin::initializeNeighborsOffsets(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::ViscosityEnergy::initializeViscosityEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::insideDiffusionBox(), CompuCell3D::AdjacentNeighbor::isInner(), CompuCell3D::CellBoundaryTrackerPlugin::isTouchingLatticeBoundary(), CompuCell3D::Field3DImpl< precision >::isValid(), CompuCell3D::Array2DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DField3DAdapter< T >::isValid(), CompuCell3D::BoundaryStrategy::isValid(), CompuCell3D::UniformFieldInitializer::layOutCells(), CompuCell3D::BlobFieldInitializer::layOutCells(), CompuCell3D::Potts3D::metropolisBoundaryWalker(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::Potts3D::metropolisList(), CompuCell3D::operator+(), operator+=(), CompuCell3D::operator-(), operator-=(), CompuCell3D::PixelTrackerData::operator<(), CompuCell3D::BoundaryPixelTrackerData::operator<(), operator<(), CompuCell3D::operator<<(), operator=(), operator==(), CompuCell3D::operator>>(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::outputField(), CompuCell3D::FastDiffusionSolver2DFE::outputField(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::BoundaryStrategy::prepareNeighborListsHex(), CompuCell3D::BoundaryStrategy::prepareNeighborListsSquare(), CC3DTransaction::preStartInit(), CompuCell3D::FastDiffusionSolver2DFE::readConcentrationField(), CompuCell3D::FastDiffusionSolver2DFE::secreteConstantConcentrationSingleField(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteSingleField(), CompuCell3D::Potts3D::setDepth(), CompuCell3D::Field3DImpl< precision >::setDim(), CompuCell3D::Potts3D::setNeighborOrder(), CompuCell3D::AdjacentNeighbor::setPeriodicX(), CompuCell3D::TestFlexibleDiffusionSolver::setUp(), CompuCell3D::PIFInitializer::start(), CompuCell3D::DictyFieldInitializer::start(), CompuCell3D::BoxWatcher::start(), CompuCell3D::BlobFieldInitializer::start(), CompuCell3D::PIFDumper::step(), CompuCell3D::DictyChemotaxisSteppable::step(), CompuCell3D::CellDiffusionDataOutput::step(), CompuCell3D::BoxWatcher::step(), CompuCell3D::Simulator::step(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanity(), CompuCell3D::NeighborTrackerPlugin::testLatticeSanityFull(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanityFull(), CompuCell3D::Potts3D::totalEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::update(), CompuCell3D::DictyFieldInitializer::update(), and CompuCell3D::CellVelocity::updateCOMList().

short CompuCell3D::Point3D::y

Definition at line 41 of file Point3D.h.

Referenced by CompuCell3D::NeighborFinder::addNeighbors(), CompuCell3D::BoxWatcher::adjustBox(), CompuCell3D::BoxWatcher::adjustCoordinates(), CompuCell3D::Array3D< T >::allocateArray(), CompuCell3D::Array2DBorders< T >::allocateMemory(), CompuCell3D::Array3DBorders< T >::allocateMemory(), Display3DBase::belongsToField(), CompuCell3D::DictyFieldInitializer::belongToZone(), CompuCell3D::FastDiffusionSolver2DFE::boundaryConditionInit(), CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::BoundaryStrategy::calculatePointCoordinates(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::AdvectionDiffusionSolverFE::cellMap2Field(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::VelocityPlugin::changeEnergy(), CompuCell3D::CellOrientationPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellType(), CompuCell3D::ExternalPotentialPlugin::changeEnergyGlobal(), CompuCell3D::BoundaryStrategy::checkIfOffsetAlreadyStacked(), CC3DTransaction::createFloatFieldPy(), CC3DTransaction::createPreasureFields(), CC3DTransaction::createVectorCellFields(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse(), CompuCell3D::FastDiffusionSolver2DFE::diffuseSingleField(), CompuCell3D::distanceVectorInvariant(), CompuCell3D::distInvariantCM(), CompuCell3D::CellVelocity::extraInit(), CompuCell3D::PlayerSettingsPlugin::extraInit(), CompuCell3D::AdvectionDiffusionSolverFE::field2CellMap(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintPlugin::field3DChange_xy(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_yz(), CompuCell3D::LengthConstraintPlugin::field3DChange_yz(), CompuCell3D::Field3DImpl< precision >::Field3DImpl(), CC3DTransaction::fillField3D(), CC3DTransaction::fillPressureVolumeFlexPy(), CC3DTransaction::fillVelocity(), CompuCell3D::Array3DBorders< T >::freeMemory(), CompuCell3D::BoundaryStrategy::generateLatticeMultiplicativeFactors(), CompuCell3D::BlobFieldInitializer::getBlobDimensions(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::BoundaryStrategy::getNeighbor(), CompuCell3D::BoundaryStrategy::getNeighborDirect(), CompuCell3D::BoundaryStrategy::getOffsetVec(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::BoundaryStrategy::HexCoord(), CompuCell3D::Field3DIndex::index(), CompuCell3D::DefaultAlgorithm::inGrid(), CompuCell3D::ChengbangAlgorithm::inGrid(), CompuCell3D::UniformFieldInitializer::init(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::init(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::FlexibleDiffusionSolverFE::init(), CompuCell3D::FlexibleDiffusionSolverADE::init(), CompuCell3D::FastDiffusionSolver2DFE::init(), CompuCell3D::AdvectionDiffusionSolverFE::init(), CompuCell3D::BoxWatcher::init(), CompuCell3D::BlobFieldInitializer::init(), CompuCell3D::VelocityPlugin::init(), CompuCell3D::MomentOfInertiaPlugin::init(), CompuCell3D::LengthConstraintLocalFlexPlugin::init(), CompuCell3D::LengthConstraintPlugin::init(), CompuCell3D::CenterOfMassPlugin::init(), CompuCell3D::CellInstantVelocityPlugin::init(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::initializeConcentration(), CompuCell3D::BlobFieldInitializer::initializeEngulfment(), CompuCell3D::KernelDiffusionSolver::initializeKernel(), CompuCell3D::ConnectivityLocalFlexPlugin::initializeNeighborsOffsets(), CompuCell3D::ConnectivityPlugin::initializeNeighborsOffsets(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::ViscosityEnergy::initializeViscosityEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::insideDiffusionBox(), CompuCell3D::AdjacentNeighbor::isInner(), CompuCell3D::CellBoundaryTrackerPlugin::isTouchingLatticeBoundary(), CompuCell3D::Field3DImpl< precision >::isValid(), CompuCell3D::Array2DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DField3DAdapter< T >::isValid(), CompuCell3D::BoundaryStrategy::isValid(), CompuCell3D::UniformFieldInitializer::layOutCells(), CompuCell3D::BlobFieldInitializer::layOutCells(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::Potts3D::metropolisList(), CompuCell3D::operator+(), operator+=(), CompuCell3D::operator-(), operator-=(), CompuCell3D::PixelTrackerData::operator<(), CompuCell3D::BoundaryPixelTrackerData::operator<(), operator<(), CompuCell3D::operator<<(), operator=(), operator==(), CompuCell3D::operator>>(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::outputField(), CompuCell3D::FastDiffusionSolver2DFE::outputField(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::BoundaryStrategy::prepareNeighborListsHex(), CompuCell3D::BoundaryStrategy::prepareNeighborListsSquare(), CC3DTransaction::preStartInit(), CompuCell3D::FastDiffusionSolver2DFE::readConcentrationField(), CompuCell3D::FastDiffusionSolver2DFE::secreteConstantConcentrationSingleField(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteOnContactSingleField(), CompuCell3D::FastDiffusionSolver2DFE::secreteSingleField(), CompuCell3D::Potts3D::setDepth(), CompuCell3D::Field3DImpl< precision >::setDim(), CompuCell3D::Potts3D::setNeighborOrder(), CompuCell3D::AdjacentNeighbor::setPeriodicY(), CompuCell3D::TestFlexibleDiffusionSolver::setUp(), CompuCell3D::PIFInitializer::start(), CompuCell3D::DictyFieldInitializer::start(), CompuCell3D::BoxWatcher::start(), CompuCell3D::BlobFieldInitializer::start(), CompuCell3D::PIFDumper::step(), CompuCell3D::DictyChemotaxisSteppable::step(), CompuCell3D::CellDiffusionDataOutput::step(), CompuCell3D::BoxWatcher::step(), CompuCell3D::Simulator::step(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanity(), CompuCell3D::NeighborTrackerPlugin::testLatticeSanityFull(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanityFull(), CompuCell3D::Potts3D::totalEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::update(), CompuCell3D::DictyFieldInitializer::update(), and CompuCell3D::CellVelocity::updateCOMList().

short CompuCell3D::Point3D::z

Definition at line 42 of file Point3D.h.

Referenced by CompuCell3D::NeighborFinder::addNeighbors(), CompuCell3D::BoxWatcher::adjustBox(), CompuCell3D::BoxWatcher::adjustCoordinates(), CompuCell3D::Array3D< T >::allocateArray(), CompuCell3D::Array3DBorders< T >::allocateMemory(), Display3DBase::belongsToField(), CompuCell3D::DictyFieldInitializer::belongToZone(), CompuCell3D::CellInstantVelocityPlugin::calculateInstantVelocityData(), CompuCell3D::BoundaryStrategy::calculatePointCoordinates(), CompuCell3D::VelocityPlugin::calculateVelocityData(), CompuCell3D::AdvectionDiffusionSolverFE::cellMap2Field(), CompuCell3D::ViscosityEnergy::changeEnergy(), CompuCell3D::VelocityPlugin::changeEnergy(), CompuCell3D::CellOrientationPlugin::changeEnergy(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::changeEnergy_yz(), CompuCell3D::LengthConstraintPlugin::changeEnergy_yz(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellId(), CompuCell3D::ExternalPotentialPlugin::changeEnergyByCellType(), CompuCell3D::ExternalPotentialPlugin::changeEnergyGlobal(), CompuCell3D::ChickGrowthCondensingTransition::checkCondition(), CompuCell3D::BoundaryStrategy::checkIfOffsetAlreadyStacked(), CC3DTransaction::createFloatFieldPy(), CC3DTransaction::createPreasureFields(), CC3DTransaction::createVectorCellFields(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::diffuse(), CompuCell3D::distanceVectorInvariant(), CompuCell3D::distInvariantCM(), CompuCell3D::CellVelocity::extraInit(), CompuCell3D::PlayerSettingsPlugin::extraInit(), CompuCell3D::GrowthPlugin::FGF(), CompuCell3D::AdvectionDiffusionSolverFE::field2CellMap(), CompuCell3D::MomentOfInertiaPlugin::field3DChange(), CompuCell3D::CenterOfMassPlugin::field3DChange(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintPlugin::field3DChange_xz(), CompuCell3D::LengthConstraintLocalFlexPlugin::field3DChange_yz(), CompuCell3D::LengthConstraintPlugin::field3DChange_yz(), CompuCell3D::Field3DImpl< precision >::Field3DImpl(), CC3DTransaction::fillField3D(), CC3DTransaction::fillPressureVolumeFlexPy(), CC3DTransaction::fillVelocity(), CompuCell3D::BoundaryStrategy::generateLatticeMultiplicativeFactors(), CompuCell3D::BlobFieldInitializer::getBlobDimensions(), CompuCell3D::OrientedContactPlugin::getMediumOrientation(), CompuCell3D::BoundaryStrategy::getNeighbor(), CompuCell3D::BoundaryStrategy::getNeighborDirect(), CompuCell3D::BoundaryStrategy::getOffsetVec(), CompuCell3D::OrientedContactPlugin::getOrientation(), CompuCell3D::BoundaryStrategy::HexCoord(), CompuCell3D::Field3DIndex::index(), CompuCell3D::DefaultAlgorithm::inGrid(), CompuCell3D::ChengbangAlgorithm::inGrid(), CompuCell3D::UniformFieldInitializer::init(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::init(), CompuCell3D::KernelDiffusionSolver::init(), CompuCell3D::FlexibleDiffusionSolverFE::init(), CompuCell3D::FlexibleDiffusionSolverADE::init(), CompuCell3D::FastDiffusionSolver2DFE::init(), CompuCell3D::AdvectionDiffusionSolverFE::init(), CompuCell3D::BoxWatcher::init(), CompuCell3D::BlobFieldInitializer::init(), CompuCell3D::VelocityPlugin::init(), CompuCell3D::MomentOfInertiaPlugin::init(), CompuCell3D::LengthConstraintLocalFlexPlugin::init(), CompuCell3D::LengthConstraintPlugin::init(), CompuCell3D::CenterOfMassPlugin::init(), CompuCell3D::CellInstantVelocityPlugin::init(), CompuCell3D::DictyFieldInitializer::initializeCellTypes(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::initializeConcentration(), CompuCell3D::BlobFieldInitializer::initializeEngulfment(), CompuCell3D::KernelDiffusionSolver::initializeKernel(), CompuCell3D::ConnectivityLocalFlexPlugin::initializeNeighborsOffsets(), CompuCell3D::ConnectivityPlugin::initializeNeighborsOffsets(), CompuCell3D::PlasticityTrackerPlugin::initializePlasticityNeighborList(), CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::RealPlasticityTrackerPlugin::initializeRealPlasticityNeighborList(), CompuCell3D::ViscosityEnergy::initializeViscosityEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::insideDiffusionBox(), CompuCell3D::AdjacentNeighbor::isInner(), CompuCell3D::CellBoundaryTrackerPlugin::isTouchingLatticeBoundary(), CompuCell3D::Field3DImpl< precision >::isValid(), CompuCell3D::Array2DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DBordersField3DAdapter< T >::isValid(), CompuCell3D::Array3DField3DAdapter< T >::isValid(), CompuCell3D::BoundaryStrategy::isValid(), CompuCell3D::UniformFieldInitializer::layOutCells(), CompuCell3D::BlobFieldInitializer::layOutCells(), CompuCell3D::Potts3D::metropolisFast(), CompuCell3D::Potts3D::metropolisList(), CompuCell3D::operator+(), operator+=(), CompuCell3D::operator-(), operator-=(), CompuCell3D::PixelTrackerData::operator<(), CompuCell3D::BoundaryPixelTrackerData::operator<(), operator<(), CompuCell3D::operator<<(), operator=(), operator==(), CompuCell3D::operator>>(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::outputField(), CompuCell3D::FastDiffusionSolver2DFE::outputField(), CompuCell3D::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipCM(), CompuCell3D::ViscosityEnergy::precalculateAfterFlipInstantVelocityData(), CompuCell3D::precalculateCentroid(), CompuCell3D::BoundaryStrategy::prepareNeighborListsHex(), CompuCell3D::BoundaryStrategy::prepareNeighborListsSquare(), CC3DTransaction::preStartInit(), CompuCell3D::FastDiffusionSolver2DFE::readConcentrationField(), CompuCell3D::KernelDiffusionSolver::secreteOnContactSingleField(), CompuCell3D::FlexibleDiffusionSolverFE::secreteOnContactSingleField(), CompuCell3D::Potts3D::setDepth(), CompuCell3D::Field3DImpl< precision >::setDim(), CompuCell3D::Potts3D::setNeighborOrder(), CompuCell3D::AdjacentNeighbor::setPeriodicZ(), CompuCell3D::TestFlexibleDiffusionSolver::setUp(), CompuCell3D::PIFInitializer::start(), CompuCell3D::DictyFieldInitializer::start(), CompuCell3D::BoxWatcher::start(), CompuCell3D::BlobFieldInitializer::start(), CompuCell3D::PIFDumper::step(), CompuCell3D::DictyChemotaxisSteppable::step(), CompuCell3D::CellDiffusionDataOutput::step(), CompuCell3D::BoxWatcher::step(), CompuCell3D::Simulator::step(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanity(), CompuCell3D::NeighborTrackerPlugin::testLatticeSanityFull(), CompuCell3D::CellBoundaryTrackerPlugin::testLatticeSanityFull(), CompuCell3D::Potts3D::totalEnergy(), CompuCell3D::ReactionDiffusionSolverFE_SavHog::update(), CompuCell3D::DictyFieldInitializer::update(), and CompuCell3D::CellVelocity::updateCOMList().

The documentation for this class was generated from the following file:
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