CompuCell3D::PottsParseData Class Reference

#include <PottsParseData.h>

Inheritance diagram for CompuCell3D::PottsParseData:

Collaboration diagram for CompuCell3D::PottsParseData:

List of all members.

Public Member Functions

PottsParseData ()

virtual ~PottsParseData ()

EnergyFunctionCalculatorStatisticsParseData * getEnergyFunctionCalculatorStatisticsParseData ()

void Dimensions (Dim3D _dim)

void Steps (unsigned int _numSteps)

void Anneal (unsigned int _anneal)

void FlipNeighborMaxDistance (double _depth)

void Flip2DimRatio (double _flip2DimRatio)

void Temperature (double _temperature)

void KBoltzman (double _kBoltzman)

void Offset (double _offset)

void NeighborOrder (double _neighborOrder)

void LatticeType (std::string _latticeType)

void AcceptanceFunctionName (std::string _acceptanceFunctionName)

void RandomSeed (unsigned int _seed)

void DebugOutputFrequency (unsigned int _debugOutputFrequency)

void Boundary_x (std::string _boundary_x)

void Boundary_y (std::string _boundary_y)

void Boundary_z (std::string _boundary_z)

void MetropolisAlgorithm (std::string _algorithmName)

void Shape (std::string _shapeAlgorithm, int _shapeIndex=0, int _shapeSize=0, std::string _shapeInputfile="none", std::string _shapeReg="")

Public Attributes

unsigned int numSteps

unsigned int anneal

double flip2DimRatio

double temperature

double depth

bool depthFlag

unsigned int seed

unsigned int debugOutputFrequency

std::string boundary_x

std::string boundary_y

std::string boundary_z

std::string algorithmName

std::string latticeType

std::string acceptanceFunctionName

bool shapeFlag

std::string shapeAlgorithm

int shapeIndex

int shapeSize

std::string shapeInputfile

std::string shapeReg

double offset

double kBoltzman

unsigned int neighborOrder

std::vector< CellTypeMotilityData > cellTypeMotilityVector

Dim3D dim

EnergyFunctionCalculatorParseData * energyFcnParseDataPtr

Detailed Description

Definition at line 97 of file PottsParseData.h.

Constructor & Destructor Documentation

CompuCell3D::PottsParseData::PottsParseData ( ) [inline]

Definition at line 99 of file PottsParseData.h.

virtual CompuCell3D::PottsParseData::~PottsParseData ( ) [inline, virtual]

Definition at line 124 of file PottsParseData.h.

Member Function Documentation

EnergyFunctionCalculatorStatisticsParseData* CompuCell3D::PottsParseData::getEnergyFunctionCalculatorStatisticsParseData ( ) [inline]

Definition at line 130 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Dimensions ( Dim3D _dim ) [inline]

Definition at line 173 of file PottsParseData.h.

References TypeChangeWatcherExample::dim.

void CompuCell3D::PottsParseData::Steps ( unsigned int _numSteps ) [inline]

Definition at line 174 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Anneal ( unsigned int _anneal ) [inline]

Definition at line 175 of file PottsParseData.h.

void CompuCell3D::PottsParseData::FlipNeighborMaxDistance ( double _depth ) [inline]

Definition at line 176 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Flip2DimRatio ( double _flip2DimRatio ) [inline]

Definition at line 180 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Temperature ( double _temperature ) [inline]

Definition at line 181 of file PottsParseData.h.

void CompuCell3D::PottsParseData::KBoltzman ( double _kBoltzman ) [inline]

Definition at line 182 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Offset ( double _offset ) [inline]

Definition at line 183 of file PottsParseData.h.

void CompuCell3D::PottsParseData::NeighborOrder ( double _neighborOrder ) [inline]

Definition at line 184 of file PottsParseData.h.

void CompuCell3D::PottsParseData::LatticeType ( std::string _latticeType ) [inline]

Definition at line 185 of file PottsParseData.h.

void CompuCell3D::PottsParseData::AcceptanceFunctionName ( std::string _acceptanceFunctionName ) [inline]

Definition at line 186 of file PottsParseData.h.

void CompuCell3D::PottsParseData::RandomSeed ( unsigned int _seed ) [inline]

Definition at line 187 of file PottsParseData.h.

void CompuCell3D::PottsParseData::DebugOutputFrequency ( unsigned int _debugOutputFrequency ) [inline]

Definition at line 188 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Boundary_x ( std::string _boundary_x ) [inline]

Definition at line 189 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Boundary_y ( std::string _boundary_y ) [inline]

Definition at line 190 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Boundary_z ( std::string _boundary_z ) [inline]

Definition at line 191 of file PottsParseData.h.

void CompuCell3D::PottsParseData::MetropolisAlgorithm ( std::string _algorithmName ) [inline]

Definition at line 192 of file PottsParseData.h.

void CompuCell3D::PottsParseData::Shape	(	std::string	_shapeAlgorithm,
		int	_shapeIndex = `0`,
		int	_shapeSize = `0`,
		std::string	_shapeInputfile = `"none"`,
		std::string	_shapeReg = `""`
	)			`[inline]`

Definition at line 193 of file PottsParseData.h.

Member Data Documentation

unsigned int CompuCell3D::PottsParseData::numSteps

Definition at line 142 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::finish(), and CompuCell3D::Simulator::initializePottsCC3D().

unsigned int CompuCell3D::PottsParseData::anneal

Definition at line 143 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::finish(), and CompuCell3D::Simulator::initializePottsCC3D().

double CompuCell3D::PottsParseData::flip2DimRatio

Definition at line 144 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D(), and CompuCell3D::Simulator::step().

double CompuCell3D::PottsParseData::temperature

Definition at line 145 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::finish(), CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::Simulator::step(), and CompuCell3D::Potts3D::update().

double CompuCell3D::PottsParseData::depth

Definition at line 146 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

bool CompuCell3D::PottsParseData::depthFlag

Definition at line 147 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

unsigned int CompuCell3D::PottsParseData::seed

Definition at line 148 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

unsigned int CompuCell3D::PottsParseData::debugOutputFrequency

Definition at line 149 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D(), CompuCell3D::Simulator::step(), and CompuCell3D::Potts3D::update().

std::string CompuCell3D::PottsParseData::boundary_x

Definition at line 150 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::boundary_y

Definition at line 151 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::boundary_z

Definition at line 152 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::algorithmName

Definition at line 153 of file PottsParseData.h.

std::string CompuCell3D::PottsParseData::latticeType

Definition at line 154 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::acceptanceFunctionName

Definition at line 155 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

bool CompuCell3D::PottsParseData::shapeFlag

Definition at line 156 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::shapeAlgorithm

Definition at line 157 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

int CompuCell3D::PottsParseData::shapeIndex

Definition at line 158 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

int CompuCell3D::PottsParseData::shapeSize

Definition at line 159 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::shapeInputfile

Definition at line 160 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::string CompuCell3D::PottsParseData::shapeReg

Definition at line 161 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

double CompuCell3D::PottsParseData::offset

Definition at line 162 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

double CompuCell3D::PottsParseData::kBoltzman

Definition at line 163 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

unsigned int CompuCell3D::PottsParseData::neighborOrder

Definition at line 164 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

std::vector<CellTypeMotilityData> CompuCell3D::PottsParseData::cellTypeMotilityVector

Definition at line 165 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializeCC3D(), and CompuCell3D::Simulator::initializePottsCC3D().

Dim3D CompuCell3D::PottsParseData::dim

Definition at line 168 of file PottsParseData.h.

Referenced by CompuCell3D::Simulator::initializePottsCC3D().

EnergyFunctionCalculatorParseData* CompuCell3D::PottsParseData::energyFcnParseDataPtr

Definition at line 169 of file PottsParseData.h.

The documentation for this class was generated from the following file:

CompuCell/DOXYGEN/core/CompuCell3D/PottsParseData.h


Public Member Functions
	PottsParseData ()
virtual	~PottsParseData ()
EnergyFunctionCalculatorStatisticsParseData *	getEnergyFunctionCalculatorStatisticsParseData ()
void	Dimensions (Dim3D _dim)
void	Steps (unsigned int _numSteps)
void	Anneal (unsigned int _anneal)
void	FlipNeighborMaxDistance (double _depth)
void	Flip2DimRatio (double _flip2DimRatio)
void	Temperature (double _temperature)
void	KBoltzman (double _kBoltzman)
void	Offset (double _offset)
void	NeighborOrder (double _neighborOrder)
void	LatticeType (std::string _latticeType)
void	AcceptanceFunctionName (std::string _acceptanceFunctionName)
void	RandomSeed (unsigned int _seed)
void	DebugOutputFrequency (unsigned int _debugOutputFrequency)
void	Boundary_x (std::string _boundary_x)
void	Boundary_y (std::string _boundary_y)
void	Boundary_z (std::string _boundary_z)
void	MetropolisAlgorithm (std::string _algorithmName)
void	Shape (std::string _shapeAlgorithm, int _shapeIndex=0, int _shapeSize=0, std::string _shapeInputfile="none", std::string _shapeReg="")
Public Attributes
unsigned int	numSteps
unsigned int	anneal
double	flip2DimRatio
double	temperature
double	depth
bool	depthFlag
unsigned int	seed
unsigned int	debugOutputFrequency
std::string	boundary_x
std::string	boundary_y
std::string	boundary_z
std::string	algorithmName
std::string	latticeType
std::string	acceptanceFunctionName
bool	shapeFlag
std::string	shapeAlgorithm
int	shapeIndex
int	shapeSize
std::string	shapeInputfile
std::string	shapeReg
double	offset
double	kBoltzman
unsigned int	neighborOrder
std::vector< CellTypeMotilityData >	cellTypeMotilityVector
Dim3D	dim
EnergyFunctionCalculatorParseData *	energyFcnParseDataPtr