 <CompuCell3D>
 <Potts>
   <Dimensions x="100" y="100" z="1"/>
   <Anneal>0</Anneal>
   <Steps>100000</Steps>
   <Temperature>15</Temperature>
   <Flip2DimRatio>1.0</Flip2DimRatio>
   <!--Boundary_y>NoFlux</Boundary_y-->
 </Potts>

 <Plugin Name="PlayerSettings">
    <!--Project2D XYProj="0"/-->
    <Rotate3D XRot="27" YRot="-11"/>
 </Plugin>


<Plugin Name="CellType">
    <CellType TypeName="Medium" TypeId="0"/>
    <CellType TypeName="Bacterium" TypeId="1" />
    <CellType TypeName="Macrophage" TypeId="2"/>    
    <CellType TypeName="Wall" TypeId="3" Freeze=""/>    
 </Plugin>

   <Plugin Name="VolumeFlex">
      <VolumeEnergyParameters CellType="Macrophage" TargetVolume="150" LambdaVolume="15"/>
      <VolumeEnergyParameters CellType="Bacterium" TargetVolume="10" LambdaVolume="30"/>
   </Plugin>

   <Plugin Name="SurfaceFlex">
      <SurfaceEnergyParameters CellType="Macrophage" TargetSurface="65" LambdaSurface="10"/>
      <SurfaceEnergyParameters CellType="Bacterium" TargetSurface="12" LambdaSurface="4"/>
   </Plugin>
 

<!-- <Plugin Name="Volume">
   <TargetVolume>25</TargetVolume>
   <LambdaVolume>15.0</LambdaVolume>
 </Plugin>-->

<!-- <Plugin Name="Surface">
   <TargetSurface>20</TargetSurface>
   <LambdaSurface>4.0</LambdaSurface>
 </Plugin>-->


 <Plugin Name="Contact">
   <Energy Type1="Medium" Type2="Medium">0</Energy>
   <Energy Type1="Macrophage" Type2="Macrophage">15</Energy>
   <Energy Type1="Macrophage" Type2="Medium">8</Energy>
   <Energy Type1="Bacterium" Type2="Bacterium">15</Energy>
   <Energy Type1="Bacterium" Type2="Macrophage">15</Energy>
   <Energy Type1="Bacterium" Type2="Medium">8</Energy>
   <Energy Type1="Wall" Type2="Wall">0</Energy>
   <Energy Type1="Wall" Type2="Medium">0</Energy>
   <Energy Type1="Wall" Type2="Bacterium">50</Energy>
   <Energy Type1="Wall" Type2="Macrophage">50</Energy>
   <Depth>2</Depth>
 </Plugin>


<Plugin Name="Chemotaxis">
   <ChemicalField Source="FlexibleDiffusionSolverFE" Name="ATTR" >
	<ChemotaxisByType Type="Macrophage" Lambda="1"/>   	
   </ChemicalField>
   
 </Plugin>


 <Steppable Type="FlexibleDiffusionSolverFE">
     <DiffusionField>
        <DiffusionData>
            <FieldName>ATTR</FieldName>
            <DiffusionConstant>0.10</DiffusionConstant>
            <DecayConstant>0.0001</DecayConstant>
            <DoNotDiffuseTo>Wall</DoNotDiffuseTo> 
        </DiffusionData>
	<SecretionData>
            <!--<SecretionOnContact Type="Amoeba" SecreteOnContactWith="Medium">0.00</SecretionOnContact>-->
            <!--SecretionOnContact Type="Medium" SecreteOnContactWith="Amoeba">0.1</SecretionOnContact-->
            <Secretion Type="Bacterium">200</Secretion>
        </SecretionData>

    </DiffusionField>
 </Steppable>


 <Steppable Type="PIFInitializer">
    <PIFName>bacterium_macrophage_2D_wall_v2.pif</PIFName>
 </Steppable>


</CompuCell3D>
